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MYCBP (MYC binding protein)

Identity

Alias_namesc-myc binding protein
Alias_symbol (synonym)AMY-1
Other alias
HGNC (Hugo) MYCBP
LocusID (NCBI) 26292
Atlas_Id 41470
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 39328162 and ends at 39339050 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RHBDL2 (1p34.3) / MYCBP (1p34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYCBP   7554
Cards
Entrez_Gene (NCBI)MYCBP  26292  MYC binding protein
AliasesAMY-1
GeneCards (Weizmann)MYCBP
Ensembl hg19 (Hinxton)ENSG00000214114 [Gene_View]  chr1:39328162-39339050 [Contig_View]  MYCBP [Vega]
Ensembl hg38 (Hinxton)ENSG00000214114 [Gene_View]  chr1:39328162-39339050 [Contig_View]  MYCBP [Vega]
ICGC DataPortalENSG00000214114
TCGA cBioPortalMYCBP
AceView (NCBI)MYCBP
Genatlas (Paris)MYCBP
WikiGenes26292
SOURCE (Princeton)MYCBP
Genetics Home Reference (NIH)MYCBP
Genomic and cartography
GoldenPath hg19 (UCSC)MYCBP  -     chr1:39328162-39339050 -  1p34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MYCBP  -     1p34.3   [Description]    (hg38-Dec_2013)
EnsemblMYCBP - 1p34.3 [CytoView hg19]  MYCBP - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIMYCBP [Mapview hg19]  MYCBP [Mapview hg38]
OMIM606535   
Gene and transcription
Genbank (Entrez)AB007191 AB451287 AB451419 AK311886 BC008686
RefSeq transcript (Entrez)NM_012333
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)MYCBP
Cluster EST : UnigeneHs.591506 [ NCBI ]
CGAP (NCI)Hs.591506
Alternative Splicing GalleryENSG00000214114
Gene ExpressionMYCBP [ NCBI-GEO ]   MYCBP [ EBI - ARRAY_EXPRESS ]   MYCBP [ SEEK ]   MYCBP [ MEM ]
Gene Expression Viewer (FireBrowse)MYCBP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26292
GTEX Portal (Tissue expression)MYCBP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99417   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99417  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99417
Splice isoforms : SwissVarQ99417
PhosPhoSitePlusQ99417
Domains : Interpro (EBI)AMY1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MYCBP
DMDM Disease mutations26292
Blocks (Seattle)MYCBP
PDB (SRS)2YY0   
PDB (PDBSum)2YY0   
PDB (IMB)2YY0   
PDB (RSDB)2YY0   
Structural Biology KnowledgeBase2YY0   
SCOP (Structural Classification of Proteins)2YY0   
CATH (Classification of proteins structures)2YY0   
SuperfamilyQ99417
Human Protein AtlasENSG00000214114
Peptide AtlasQ99417
HPRD08406
IPIIPI00871174   
Protein Interaction databases
DIP (DOE-UCLA)Q99417
IntAct (EBI)Q99417
FunCoupENSG00000214114
BioGRIDMYCBP
STRING (EMBL)MYCBP
ZODIACMYCBP
Ontologies - Pathways
QuickGOQ99417
Ontology : AmiGOtranscription coactivator activity  protein binding  nucleus  cytoplasm  mitochondrion  transcription, DNA-templated  regulation of transcription, DNA-templated  spermatogenesis  
Ontology : EGO-EBItranscription coactivator activity  protein binding  nucleus  cytoplasm  mitochondrion  transcription, DNA-templated  regulation of transcription, DNA-templated  spermatogenesis  
NDEx NetworkMYCBP
Atlas of Cancer Signalling NetworkMYCBP
Wikipedia pathwaysMYCBP
Orthology - Evolution
OrthoDB26292
GeneTree (enSembl)ENSG00000214114
Phylogenetic Trees/Animal Genes : TreeFamMYCBP
HOVERGENQ99417
HOGENOMQ99417
Homologs : HomoloGeneMYCBP
Homology/Alignments : Family Browser (UCSC)MYCBP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYCBP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYCBP
dbVarMYCBP
ClinVarMYCBP
1000_GenomesMYCBP 
Exome Variant ServerMYCBP
ExAC (Exome Aggregation Consortium)MYCBP (select the gene name)
Genetic variants : HAPMAP26292
Genomic Variants (DGV)MYCBP [DGVbeta]
DECIPHER (Syndromes)1:39328162-39339050  ENSG00000214114
CONAN: Copy Number AnalysisMYCBP 
Mutations
ICGC Data PortalMYCBP 
TCGA Data PortalMYCBP 
Broad Tumor PortalMYCBP
OASIS PortalMYCBP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYCBP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMYCBP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYCBP
DgiDB (Drug Gene Interaction Database)MYCBP
DoCM (Curated mutations)MYCBP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYCBP (select a term)
intoGenMYCBP
Cancer3DMYCBP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606535   
Orphanet
MedgenMYCBP
Genetic Testing Registry MYCBP
NextProtQ99417 [Medical]
TSGene26292
GENETestsMYCBP
Huge Navigator MYCBP [HugePedia]
snp3D : Map Gene to Disease26292
BioCentury BCIQMYCBP
ClinGenMYCBP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26292
Chemical/Pharm GKB GenePA31354
Clinical trialMYCBP
Miscellaneous
canSAR (ICR)MYCBP (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYCBP
EVEXMYCBP
GoPubMedMYCBP
iHOPMYCBP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:11:22 CEST 2017

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