Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MYCNOS (MYCN opposite strand)

Identity

Alias (NCBI)MYCN-AS1
N-CYM
NCYM
NYCM
HGNC (Hugo) MYCNOS
HGNC Alias symbNCYM
N-CYM
MYCN-AS1
HGNC Alias nameMYCN antisense RNA 1
 DNA binding transcriptional activator
HGNC Previous namev-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) opposite strand
 MYCN opposite strand/antisense RNA (non-protein coding)
 MYCN opposite strand/antisense RNA
LocusID (NCBI) 10408
Atlas_Id 41474
Location 2p24.3  [Link to chromosome band 2p24]
Location_base_pair Starts at 15939898 and ends at 15942433 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYCNOS   16911
Cards
Entrez_Gene (NCBI)MYCNOS  10408  MYCN opposite strand
AliasesMYCN-AS1; N-CYM; NCYM; NYCM
GeneCards (Weizmann)MYCNOS
Ensembl hg19 (Hinxton)ENSG00000233718 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233718 [Gene_View]  ENSG00000233718 [Sequence]  chr2:15939898-15942433 [Contig_View]  MYCNOS [Vega]
ICGC DataPortalENSG00000233718
TCGA cBioPortalMYCNOS
AceView (NCBI)MYCNOS
Genatlas (Paris)MYCNOS
WikiGenes10408
SOURCE (Princeton)MYCNOS
Genetics Home Reference (NIH)MYCNOS
Genomic and cartography
GoldenPath hg38 (UCSC)MYCNOS  -     chr2:15939898-15942433 -  2p24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MYCNOS  -     2p24.3   [Description]    (hg19-Feb_2009)
GoldenPathMYCNOS - 2p24.3 [CytoView hg19]  MYCNOS - 2p24.3 [CytoView hg38]
ImmunoBaseENSG00000233718
genome Data Viewer NCBIMYCNOS [Mapview hg19]  
OMIM605374   
Gene and transcription
Genbank (Entrez)AA609982 BC002892 S49953
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MYCNOS
Alternative Splicing GalleryENSG00000233718
Gene ExpressionMYCNOS [ NCBI-GEO ]   MYCNOS [ EBI - ARRAY_EXPRESS ]   MYCNOS [ SEEK ]   MYCNOS [ MEM ]
Gene Expression Viewer (FireBrowse)MYCNOS [ Firebrowse - Broad ]
GenevisibleExpression of MYCNOS in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10408
GTEX Portal (Tissue expression)MYCNOS
Human Protein AtlasENSG00000233718-MYCNOS [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP40205   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP40205  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP40205
Splice isoforms : SwissVarP40205
PhosPhoSitePlusP40205
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MYCNOS
DMDM Disease mutations10408
Blocks (Seattle)MYCNOS
SuperfamilyP40205
Human Protein Atlas [tissue]ENSG00000233718-MYCNOS [tissue]
Peptide AtlasP40205
IPIIPI00027605   
Protein Interaction databases
DIP (DOE-UCLA)P40205
IntAct (EBI)P40205
FunCoupENSG00000233718
BioGRIDMYCNOS
STRING (EMBL)MYCNOS
ZODIACMYCNOS
Ontologies - Pathways
QuickGOP40205
Ontology : AmiGOprotein binding  nucleus  cytoplasm  multicellular organism development  positive regulation of cell proliferation  regulation of protein stability  negative regulation of kinase activity  negative regulation of apoptotic process  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  multicellular organism development  positive regulation of cell proliferation  regulation of protein stability  negative regulation of kinase activity  negative regulation of apoptotic process  
NDEx NetworkMYCNOS
Atlas of Cancer Signalling NetworkMYCNOS
Wikipedia pathwaysMYCNOS
Orthology - Evolution
OrthoDB10408
GeneTree (enSembl)ENSG00000233718
Phylogenetic Trees/Animal Genes : TreeFamMYCNOS
HOGENOMP40205
Homologs : HomoloGeneMYCNOS
Homology/Alignments : Family Browser (UCSC)MYCNOS
Gene fusions - Rearrangements
Fusion : QuiverMYCNOS
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYCNOS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYCNOS
dbVarMYCNOS
ClinVarMYCNOS
1000_GenomesMYCNOS 
Exome Variant ServerMYCNOS
GNOMAD BrowserENSG00000233718
Varsome BrowserMYCNOS
Genetic variants : HAPMAP10408
Genomic Variants (DGV)MYCNOS [DGVbeta]
DECIPHERMYCNOS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMYCNOS 
Mutations
ICGC Data PortalMYCNOS 
TCGA Data PortalMYCNOS 
Broad Tumor PortalMYCNOS
OASIS PortalMYCNOS [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMYCNOS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYCNOS
DgiDB (Drug Gene Interaction Database)MYCNOS
DoCM (Curated mutations)MYCNOS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYCNOS (select a term)
intoGenMYCNOS
Cancer3DMYCNOS(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605374   
Orphanet
DisGeNETMYCNOS
MedgenMYCNOS
Genetic Testing Registry MYCNOS
NextProtP40205 [Medical]
TSGene10408
GENETestsMYCNOS
Target ValidationMYCNOS
Huge Navigator MYCNOS [HugePedia]
snp3D : Map Gene to Disease10408
BioCentury BCIQMYCNOS
ClinGenMYCNOS
Clinical trials, drugs, therapy
Protein Interactions : CTD10408
Pharm GKB GenePA134938338
Clinical trialMYCNOS
Miscellaneous
canSAR (ICR)MYCNOS (select the gene name)
HarmonizomeMYCNOS
DataMed IndexMYCNOS
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYCNOS
EVEXMYCNOS
GoPubMedMYCNOS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:26:08 CEST 2020

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