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MYCNOS (MYCN opposite strand)

Identity

Alias_namesv-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) opposite strand
MYCN opposite strand/antisense RNA (non-protein coding)
MYCN opposite strand/antisense RNA
Alias_symbol (synonym)NCYM
N-CYM
MYCN-AS1
Other aliasNYCM
HGNC (Hugo) MYCNOS
LocusID (NCBI) 10408
Atlas_Id 41474
Location 2p24.3  [Link to chromosome band 2p24]
Location_base_pair Starts at 15939898 and ends at 15942249 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYCNOS   16911
Cards
Entrez_Gene (NCBI)MYCNOS  10408  MYCN opposite strand
AliasesMYCN-AS1; N-CYM; NCYM; NYCM
GeneCards (Weizmann)MYCNOS
Ensembl hg19 (Hinxton)ENSG00000233718 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233718 [Gene_View]  chr2:15939898-15942249 [Contig_View]  MYCNOS [Vega]
ICGC DataPortalENSG00000233718
TCGA cBioPortalMYCNOS
AceView (NCBI)MYCNOS
Genatlas (Paris)MYCNOS
WikiGenes10408
SOURCE (Princeton)MYCNOS
Genetics Home Reference (NIH)MYCNOS
Genomic and cartography
GoldenPath hg38 (UCSC)MYCNOS  -     chr2:15939898-15942249 -  2p24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MYCNOS  -     2p24.3   [Description]    (hg19-Feb_2009)
EnsemblMYCNOS - 2p24.3 [CytoView hg19]  MYCNOS - 2p24.3 [CytoView hg38]
Mapping of homologs : NCBIMYCNOS [Mapview hg19]  MYCNOS [Mapview hg38]
OMIM605374   
Gene and transcription
Genbank (Entrez)AA609982 BC002892 S49953
RefSeq transcript (Entrez)NM_001329968 NM_006316
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MYCNOS
Cluster EST : UnigeneHs.651453 [ NCBI ]
CGAP (NCI)Hs.651453
Alternative Splicing GalleryENSG00000233718
Gene ExpressionMYCNOS [ NCBI-GEO ]   MYCNOS [ EBI - ARRAY_EXPRESS ]   MYCNOS [ SEEK ]   MYCNOS [ MEM ]
Gene Expression Viewer (FireBrowse)MYCNOS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10408
GTEX Portal (Tissue expression)MYCNOS
Protein : pattern, domain, 3D structure
UniProt/SwissProtP40205   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP40205  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP40205
Splice isoforms : SwissVarP40205
PhosPhoSitePlusP40205
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MYCNOS
DMDM Disease mutations10408
Blocks (Seattle)MYCNOS
SuperfamilyP40205
Human Protein AtlasENSG00000233718
Peptide AtlasP40205
IPIIPI00027605   
Protein Interaction databases
DIP (DOE-UCLA)P40205
IntAct (EBI)P40205
FunCoupENSG00000233718
BioGRIDMYCNOS
STRING (EMBL)MYCNOS
ZODIACMYCNOS
Ontologies - Pathways
QuickGOP40205
Ontology : AmiGOprotein binding  nucleus  cytoplasm  multicellular organism development  positive regulation of cell proliferation  regulation of protein stability  negative regulation of kinase activity  negative regulation of apoptotic process  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  multicellular organism development  positive regulation of cell proliferation  regulation of protein stability  negative regulation of kinase activity  negative regulation of apoptotic process  
NDEx NetworkMYCNOS
Atlas of Cancer Signalling NetworkMYCNOS
Wikipedia pathwaysMYCNOS
Orthology - Evolution
OrthoDB10408
GeneTree (enSembl)ENSG00000233718
Phylogenetic Trees/Animal Genes : TreeFamMYCNOS
HOVERGENP40205
HOGENOMP40205
Homologs : HomoloGeneMYCNOS
Homology/Alignments : Family Browser (UCSC)MYCNOS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYCNOS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYCNOS
dbVarMYCNOS
ClinVarMYCNOS
1000_GenomesMYCNOS 
Exome Variant ServerMYCNOS
ExAC (Exome Aggregation Consortium)MYCNOS (select the gene name)
Genetic variants : HAPMAP10408
Genomic Variants (DGV)MYCNOS [DGVbeta]
DECIPHERMYCNOS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMYCNOS 
Mutations
ICGC Data PortalMYCNOS 
TCGA Data PortalMYCNOS 
Broad Tumor PortalMYCNOS
OASIS PortalMYCNOS [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMYCNOS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYCNOS
DgiDB (Drug Gene Interaction Database)MYCNOS
DoCM (Curated mutations)MYCNOS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYCNOS (select a term)
intoGenMYCNOS
Cancer3DMYCNOS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605374   
Orphanet
MedgenMYCNOS
Genetic Testing Registry MYCNOS
NextProtP40205 [Medical]
TSGene10408
GENETestsMYCNOS
Target ValidationMYCNOS
Huge Navigator MYCNOS [HugePedia]
snp3D : Map Gene to Disease10408
BioCentury BCIQMYCNOS
ClinGenMYCNOS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10408
Chemical/Pharm GKB GenePA134938338
Clinical trialMYCNOS
Miscellaneous
canSAR (ICR)MYCNOS (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYCNOS
EVEXMYCNOS
GoPubMedMYCNOS
iHOPMYCNOS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:45:44 CEST 2017

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