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MYCT1 (MYC target 1)

Identity

Alias_symbol (synonym)MTLC
FLJ21269
Other alias
HGNC (Hugo) MYCT1
LocusID (NCBI) 80177
Atlas_Id 43904
Location 6q25.2  [Link to chromosome band 6q25]
Location_base_pair Starts at 152697895 and ends at 152724580 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYCT1   23172
Cards
Entrez_Gene (NCBI)MYCT1  80177  MYC target 1
AliasesMTLC
GeneCards (Weizmann)MYCT1
Ensembl hg19 (Hinxton)ENSG00000120279 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120279 [Gene_View]  ENSG00000120279 [Sequence]  chr6:152697895-152724580 [Contig_View]  MYCT1 [Vega]
ICGC DataPortalENSG00000120279
TCGA cBioPortalMYCT1
AceView (NCBI)MYCT1
Genatlas (Paris)MYCT1
WikiGenes80177
SOURCE (Princeton)MYCT1
Genetics Home Reference (NIH)MYCT1
Genomic and cartography
GoldenPath hg38 (UCSC)MYCT1  -     chr6:152697895-152724580 +  6q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MYCT1  -     6q25.2   [Description]    (hg19-Feb_2009)
EnsemblMYCT1 - 6q25.2 [CytoView hg19]  MYCT1 - 6q25.2 [CytoView hg38]
Mapping of homologs : NCBIMYCT1 [Mapview hg19]  MYCT1 [Mapview hg38]
OMIM616805   
Gene and transcription
Genbank (Entrez)AA152372 AF527367 AK021612 AK024922 AL834500
RefSeq transcript (Entrez)NM_025107
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MYCT1
Cluster EST : UnigeneHs.18160 [ NCBI ]
CGAP (NCI)Hs.18160
Alternative Splicing GalleryENSG00000120279
Gene ExpressionMYCT1 [ NCBI-GEO ]   MYCT1 [ EBI - ARRAY_EXPRESS ]   MYCT1 [ SEEK ]   MYCT1 [ MEM ]
Gene Expression Viewer (FireBrowse)MYCT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80177
GTEX Portal (Tissue expression)MYCT1
Human Protein AtlasENSG00000120279-MYCT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N699   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N699  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N699
Splice isoforms : SwissVarQ8N699
PhosPhoSitePlusQ8N699
Domains : Interpro (EBI)Myc_target_1   
Domain families : Pfam (Sanger)Myc_target_1 (PF15179)   
Domain families : Pfam (NCBI)pfam15179   
Conserved Domain (NCBI)MYCT1
DMDM Disease mutations80177
Blocks (Seattle)MYCT1
SuperfamilyQ8N699
Human Protein Atlas [tissue]ENSG00000120279-MYCT1 [tissue]
Peptide AtlasQ8N699
HPRD17617
IPIIPI00297164   IPI00977872   IPI00978333   
Protein Interaction databases
DIP (DOE-UCLA)Q8N699
IntAct (EBI)Q8N699
FunCoupENSG00000120279
BioGRIDMYCT1
STRING (EMBL)MYCT1
ZODIACMYCT1
Ontologies - Pathways
QuickGOQ8N699
Ontology : AmiGOnucleoplasm  nucleoplasm  intracellular membrane-bounded organelle  
Ontology : EGO-EBInucleoplasm  nucleoplasm  intracellular membrane-bounded organelle  
NDEx NetworkMYCT1
Atlas of Cancer Signalling NetworkMYCT1
Wikipedia pathwaysMYCT1
Orthology - Evolution
OrthoDB80177
GeneTree (enSembl)ENSG00000120279
Phylogenetic Trees/Animal Genes : TreeFamMYCT1
HOVERGENQ8N699
HOGENOMQ8N699
Homologs : HomoloGeneMYCT1
Homology/Alignments : Family Browser (UCSC)MYCT1
Gene fusions - Rearrangements
Fusion : QuiverMYCT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYCT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYCT1
dbVarMYCT1
ClinVarMYCT1
1000_GenomesMYCT1 
Exome Variant ServerMYCT1
ExAC (Exome Aggregation Consortium)ENSG00000120279
GNOMAD BrowserENSG00000120279
Varsome BrowserMYCT1
Genetic variants : HAPMAP80177
Genomic Variants (DGV)MYCT1 [DGVbeta]
DECIPHERMYCT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMYCT1 
Mutations
ICGC Data PortalMYCT1 
TCGA Data PortalMYCT1 
Broad Tumor PortalMYCT1
OASIS PortalMYCT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYCT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMYCT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYCT1
DgiDB (Drug Gene Interaction Database)MYCT1
DoCM (Curated mutations)MYCT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYCT1 (select a term)
intoGenMYCT1
Cancer3DMYCT1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616805   
Orphanet
DisGeNETMYCT1
MedgenMYCT1
Genetic Testing Registry MYCT1
NextProtQ8N699 [Medical]
TSGene80177
GENETestsMYCT1
Target ValidationMYCT1
Huge Navigator MYCT1 [HugePedia]
snp3D : Map Gene to Disease80177
BioCentury BCIQMYCT1
ClinGenMYCT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80177
Chemical/Pharm GKB GenePA134908917
Clinical trialMYCT1
Miscellaneous
canSAR (ICR)MYCT1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYCT1
EVEXMYCT1
GoPubMedMYCT1
iHOPMYCT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:24:27 CET 2018

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