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MYDGF (myeloid derived growth factor)

Identity

Alias_namesIL27
IL27w
C19orf10
interleukin 27 working designation
chromosome 19 open reading frame 10
Alias_symbol (synonym)R33729_1
IL25
SF20
IL-25
IL-27
Other aliasEUROIMAGE1875335
HGNC (Hugo) MYDGF
LocusID (NCBI) 56005
Atlas_Id 55171
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4657545 and ends at 4670403 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYDGF   16948
Cards
Entrez_Gene (NCBI)MYDGF  56005  myeloid derived growth factor
AliasesC19orf10; EUROIMAGE1875335; IL25; IL27; 
IL27w; R33729_1; SF20
GeneCards (Weizmann)MYDGF
Ensembl hg19 (Hinxton)ENSG00000074842 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000074842 [Gene_View]  chr19:4657545-4670403 [Contig_View]  MYDGF [Vega]
ICGC DataPortalENSG00000074842
TCGA cBioPortalMYDGF
AceView (NCBI)MYDGF
Genatlas (Paris)MYDGF
WikiGenes56005
SOURCE (Princeton)MYDGF
Genetics Home Reference (NIH)MYDGF
Genomic and cartography
GoldenPath hg38 (UCSC)MYDGF  -     chr19:4657545-4670403 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MYDGF  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblMYDGF - 19p13.3 [CytoView hg19]  MYDGF - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIMYDGF [Mapview hg19]  MYDGF [Mapview hg38]
OMIM606746   
Gene and transcription
Genbank (Entrez)AF282264 AK098829 AL365373 AL365374 BC003639
RefSeq transcript (Entrez)NM_019107
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MYDGF
Cluster EST : UnigeneHs.465645 [ NCBI ]
CGAP (NCI)Hs.465645
Alternative Splicing GalleryENSG00000074842
Gene ExpressionMYDGF [ NCBI-GEO ]   MYDGF [ EBI - ARRAY_EXPRESS ]   MYDGF [ SEEK ]   MYDGF [ MEM ]
Gene Expression Viewer (FireBrowse)MYDGF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56005
GTEX Portal (Tissue expression)MYDGF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969H8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969H8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969H8
Splice isoforms : SwissVarQ969H8
PhosPhoSitePlusQ969H8
Domains : Interpro (EBI)MYDGF   
Domain families : Pfam (Sanger)UPF0556 (PF10572)   
Domain families : Pfam (NCBI)pfam10572   
Conserved Domain (NCBI)MYDGF
DMDM Disease mutations56005
Blocks (Seattle)MYDGF
SuperfamilyQ969H8
Human Protein AtlasENSG00000074842
Peptide AtlasQ969H8
HPRD08415
IPIIPI00056357   
Protein Interaction databases
DIP (DOE-UCLA)Q969H8
IntAct (EBI)Q969H8
FunCoupENSG00000074842
BioGRIDMYDGF
STRING (EMBL)MYDGF
ZODIACMYDGF
Ontologies - Pathways
QuickGOQ969H8
Ontology : AmiGOangiogenesis  positive regulation of protein phosphorylation  positive regulation of endothelial cell proliferation  protein binding  extracellular space  endoplasmic reticulum lumen  endoplasmic reticulum-Golgi intermediate compartment  apoptotic process  positive regulation of phosphatidylinositol 3-kinase signaling  IRE1-mediated unfolded protein response  negative regulation of apoptotic process  positive regulation of MAPK cascade  positive regulation of angiogenesis  positive regulation of transcription from RNA polymerase II promoter  positive regulation of protein kinase B signaling  extracellular exosome  
Ontology : EGO-EBIangiogenesis  positive regulation of protein phosphorylation  positive regulation of endothelial cell proliferation  protein binding  extracellular space  endoplasmic reticulum lumen  endoplasmic reticulum-Golgi intermediate compartment  apoptotic process  positive regulation of phosphatidylinositol 3-kinase signaling  IRE1-mediated unfolded protein response  negative regulation of apoptotic process  positive regulation of MAPK cascade  positive regulation of angiogenesis  positive regulation of transcription from RNA polymerase II promoter  positive regulation of protein kinase B signaling  extracellular exosome  
NDEx NetworkMYDGF
Atlas of Cancer Signalling NetworkMYDGF
Wikipedia pathwaysMYDGF
Orthology - Evolution
OrthoDB56005
GeneTree (enSembl)ENSG00000074842
Phylogenetic Trees/Animal Genes : TreeFamMYDGF
HOVERGENQ969H8
HOGENOMQ969H8
Homologs : HomoloGeneMYDGF
Homology/Alignments : Family Browser (UCSC)MYDGF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYDGF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYDGF
dbVarMYDGF
ClinVarMYDGF
1000_GenomesMYDGF 
Exome Variant ServerMYDGF
ExAC (Exome Aggregation Consortium)MYDGF (select the gene name)
Genetic variants : HAPMAP56005
Genomic Variants (DGV)MYDGF [DGVbeta]
DECIPHERMYDGF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMYDGF 
Mutations
ICGC Data PortalMYDGF 
TCGA Data PortalMYDGF 
Broad Tumor PortalMYDGF
OASIS PortalMYDGF [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMYDGF
BioMutasearch MYDGF
DgiDB (Drug Gene Interaction Database)MYDGF
DoCM (Curated mutations)MYDGF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYDGF (select a term)
intoGenMYDGF
Cancer3DMYDGF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606746   
Orphanet
MedgenMYDGF
Genetic Testing Registry MYDGF
NextProtQ969H8 [Medical]
TSGene56005
GENETestsMYDGF
Target ValidationMYDGF
Huge Navigator MYDGF [HugePedia]
snp3D : Map Gene to Disease56005
BioCentury BCIQMYDGF
ClinGenMYDGF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56005
Chemical/Pharm GKB GenePA29827
Clinical trialMYDGF
Miscellaneous
canSAR (ICR)MYDGF (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYDGF
EVEXMYDGF
GoPubMedMYDGF
iHOPMYDGF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:00:56 CEST 2017

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