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MYEF2 (myelin expression factor 2)

Identity

Alias (NCBI)HsT18564
MEF-2
MST156
MSTP156
myEF-2
HGNC (Hugo) MYEF2
HGNC Alias symbMEF-2
FLJ11213
KIAA1341
HsT18564
LocusID (NCBI) 50804
Atlas_Id 70604
Location 15q21.1  [Link to chromosome band 15q21]
Location_base_pair Starts at 48139428 and ends at 48178361 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYEF2   17940
Cards
Entrez_Gene (NCBI)MYEF2  50804  myelin expression factor 2
AliasesHsT18564; MEF-2; MST156; MSTP156; 
myEF-2
GeneCards (Weizmann)MYEF2
Ensembl hg19 (Hinxton)ENSG00000104177 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104177 [Gene_View]  ENSG00000104177 [Sequence]  chr15:48139428-48178361 [Contig_View]  MYEF2 [Vega]
ICGC DataPortalENSG00000104177
TCGA cBioPortalMYEF2
AceView (NCBI)MYEF2
Genatlas (Paris)MYEF2
WikiGenes50804
SOURCE (Princeton)MYEF2
Genetics Home Reference (NIH)MYEF2
Genomic and cartography
GoldenPath hg38 (UCSC)MYEF2  -     chr15:48139428-48178361 -  15q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MYEF2  -     15q21.1   [Description]    (hg19-Feb_2009)
GoldenPathMYEF2 - 15q21.1 [CytoView hg19]  MYEF2 - 15q21.1 [CytoView hg38]
ImmunoBaseENSG00000104177
genome Data Viewer NCBIMYEF2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB037762 AF106685 AF190159 AK002075 AK023133
RefSeq transcript (Entrez)NM_001301210 NM_016132
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MYEF2
Alternative Splicing GalleryENSG00000104177
Gene ExpressionMYEF2 [ NCBI-GEO ]   MYEF2 [ EBI - ARRAY_EXPRESS ]   MYEF2 [ SEEK ]   MYEF2 [ MEM ]
Gene Expression Viewer (FireBrowse)MYEF2 [ Firebrowse - Broad ]
GenevisibleExpression of MYEF2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50804
GTEX Portal (Tissue expression)MYEF2
Human Protein AtlasENSG00000104177-MYEF2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2K5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2K5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2K5
Splice isoforms : SwissVarQ9P2K5
PhosPhoSitePlusQ9P2K5
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)MYEF2    MYEF2_RRM1    MYEF2_RRM3    Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)MYEF2
DMDM Disease mutations50804
Blocks (Seattle)MYEF2
SuperfamilyQ9P2K5
Human Protein Atlas [tissue]ENSG00000104177-MYEF2 [tissue]
Peptide AtlasQ9P2K5
HPRD14794
IPIIPI00555833   IPI00386418   IPI00555987   IPI00292940   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2K5
IntAct (EBI)Q9P2K5
FunCoupENSG00000104177
BioGRIDMYEF2
STRING (EMBL)MYEF2
ZODIACMYEF2
Ontologies - Pathways
QuickGOQ9P2K5
Ontology : AmiGORNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  single-stranded DNA binding  RNA binding  mRNA binding  nucleus  nucleus  cytoplasm  regulation of transcription by RNA polymerase II  myotube differentiation  neuron differentiation  post-mRNA release spliceosomal complex  ribonucleoprotein complex  regulation of mRNA stability involved in response to oxidative stress  
Ontology : EGO-EBIRNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  single-stranded DNA binding  RNA binding  mRNA binding  nucleus  nucleus  cytoplasm  regulation of transcription by RNA polymerase II  myotube differentiation  neuron differentiation  post-mRNA release spliceosomal complex  ribonucleoprotein complex  regulation of mRNA stability involved in response to oxidative stress  
NDEx NetworkMYEF2
Atlas of Cancer Signalling NetworkMYEF2
Wikipedia pathwaysMYEF2
Orthology - Evolution
OrthoDB50804
GeneTree (enSembl)ENSG00000104177
Phylogenetic Trees/Animal Genes : TreeFamMYEF2
HOGENOMQ9P2K5
Homologs : HomoloGeneMYEF2
Homology/Alignments : Family Browser (UCSC)MYEF2
Gene fusions - Rearrangements
Fusion : QuiverMYEF2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYEF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYEF2
dbVarMYEF2
ClinVarMYEF2
1000_GenomesMYEF2 
Exome Variant ServerMYEF2
GNOMAD BrowserENSG00000104177
Varsome BrowserMYEF2
Genetic variants : HAPMAP50804
Genomic Variants (DGV)MYEF2 [DGVbeta]
DECIPHERMYEF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMYEF2 
Mutations
ICGC Data PortalMYEF2 
TCGA Data PortalMYEF2 
Broad Tumor PortalMYEF2
OASIS PortalMYEF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYEF2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMYEF2
Mutations and Diseases : HGMDMYEF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYEF2
DgiDB (Drug Gene Interaction Database)MYEF2
DoCM (Curated mutations)MYEF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYEF2 (select a term)
intoGenMYEF2
Cancer3DMYEF2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMYEF2
MedgenMYEF2
Genetic Testing Registry MYEF2
NextProtQ9P2K5 [Medical]
TSGene50804
GENETestsMYEF2
Target ValidationMYEF2
Huge Navigator MYEF2 [HugePedia]
snp3D : Map Gene to Disease50804
BioCentury BCIQMYEF2
ClinGenMYEF2
Clinical trials, drugs, therapy
Protein Interactions : CTD50804
Pharm GKB GenePA134877084
Clinical trialMYEF2
Miscellaneous
canSAR (ICR)MYEF2 (select the gene name)
HarmonizomeMYEF2
DataMed IndexMYEF2
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYEF2
EVEXMYEF2
GoPubMedMYEF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:19:01 CEST 2020

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