Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MYF6 (myogenic factor 6 (herculin))

Identity

Other namesCNM3
MRF4
bHLHc4
myf-6
HGNC (Hugo) MYF6
LocusID (NCBI) 4618
Location 12q21.31
Location_base_pair Starts at 81101408 and ends at 81103256 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MYF6   7566
Entrez_Gene (NCBI)MYF6  4618  myogenic factor 6 (herculin)
Cards
GeneCards (Weizmann)MYF6
Ensembl (Hinxton)ENSG00000111046 [Gene_View]  chr12:81101408-81103256 [Contig_View]  MYF6 [Vega]
AceView (NCBI)MYF6
Genatlas (Paris)MYF6
SOURCE (Stanford)NM_002469
Genomic and cartography
GoldenPath (UCSC)MYF6  -  12q21.31   chr12:81101408-81103256 +  12q21.31   [Description]    (hg19-Feb_2009)
EnsemblMYF6 - 12q21.31 [CytoView]
Mapping of homologs : NCBIMYF6 [Mapview]
OMIM159991   160150   300376   310200   614408   
Gene and transcription
Genbank (Entrez)AA176491 AK313287 BC017834 CR407641 CR541763
RefSeq transcript (SRS)NM_002469
RefSeq transcript (Entrez)NM_002469
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NG_021392 NT_029419 NW_001838061 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NG_021392 NT_029419 NW_001838061 NW_004078075
Consensus coding sequences : CCDS (NCBI)MYF6
Cluster EST : UnigeneHs.35937 [ SRS ] Hs.35937 [ NCBI ]
CGAP (NCI)Hs.35937
Alternative Splicing : Fast-db (Paris)GSHG0006871
Alternative Splicing GalleryENSG00000111046
Gene ExpressionMYF6 [ NCBI-GEO ]   MYF6 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP23409 (SRS) P23409 (Uniprot)
NextProtP23409
With graphics : InterProP23409
Splice isoforms : SwissVarP23409(Swissvar)
Domaine pattern : Prosite (SRS)BHLH (PS50888)   
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (SRS)Basic    HLH_dom   
Domains : Interpro (EBI)Basic    HLH_dom   
Related proteins : CluSTrP23409
Domain families : Pfam (SRS)Basic (PF01586)    HLH (PF00010)   
Domain families : Pfam (Sanger)Basic (PF01586)    HLH (PF00010)   
Domain families : Pfam (NCBI)pfam01586    pfam00010   
Domain families : Smart (EMBL)BASIC (SM00520)  HLH (SM00353)  
DMDM4618
Blocks (Seattle)P23409
Human Protein AtlasENSG00000111046
HPRD01169
IPIIPI00011548   
Protein Interaction databases
DIP (DOE-UCLA)P23409
IntAct (EBI)P23409
FunCoupENSG00000111046
REACTOMEMYF6
Protein Interaction Database4618
BioGRIDMYF6
InParanoidP23409
Interologous Interaction database P23409
IntegromeDBMYF6
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)MYF6
SNP (GeneSNP Utah)MYF6
SNP : HGBaseMYF6
Genetic variants : HAPMAPMYF6
Somatic Mutations in Cancer : COSMICMYF6 
CONAN: Copy Number AnalysisMYF6 
Mutations and Diseases : HGMDMYF6
OMIM159991    160150    300376    310200    614408   
GENETests159991    160150    300376    310200    614408   
Disease Genetic AssociationMYF6
Huge Navigator MYF6 [HugePedia]  MYF6 [HugeCancerGEM]
Genomic VariantsMYF6  MYF6 [DGVbeta]
snp3D : Map Gene to Disease4618
General knowledge
Homologs : HomoloGeneMYF6
Homology/Alignments : Family Browser (UCSC)MYF6
Phylogenetic Trees/Animal Genes : TreeFamMYF6
Chemical/Protein Interactions : CTD4618
Chemical/Pharm GKB GenePA31364
Clinical trialMYF6
Cancer Resource (Charite)ENSG00000111046
Ontology : AmiGOsomitogenesis  sequence-specific DNA binding transcription factor activity  nucleus  nucleoplasm  regulation of transcription from RNA polymerase II promoter  skeletal muscle tissue development  muscle cell differentiation  muscle cell fate commitment  skeletal muscle tissue regeneration  negative regulation of transcription, DNA-dependent  positive regulation of transcription from RNA polymerase II promoter  protein heterodimerization activity  positive regulation of muscle cell differentiation  muscle tissue morphogenesis  E-box binding  
Ontology : EGO-EBIsomitogenesis  sequence-specific DNA binding transcription factor activity  nucleus  nucleoplasm  regulation of transcription from RNA polymerase II promoter  skeletal muscle tissue development  muscle cell differentiation  muscle cell fate commitment  skeletal muscle tissue regeneration  negative regulation of transcription, DNA-dependent  positive regulation of transcription from RNA polymerase II promoter  protein heterodimerization activity  positive regulation of muscle cell differentiation  muscle tissue morphogenesis  E-box binding  
Other databases
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
PubGeneMYF6
iHOPMYF6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:38:01 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.