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MYH16 (myosin heavy chain 16 pseudogene)

Identity

Alias_namesMYH5
myosin, heavy polypeptide 5
myosin, heavy polypeptide 16
myosin, heavy chain 16
Alias_symbol (synonym)MHC20
MYH16P
Other alias
HGNC (Hugo) MYH16
LocusID (NCBI) 84176
Atlas_Id 42899
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 99273301 and ends at 99297971 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYH16   31038
Cards
Entrez_Gene (NCBI)MYH16  84176  myosin heavy chain 16 pseudogene
AliasesMHC20; MYH16P; MYH5
GeneCards (Weizmann)MYH16
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:99273301-99297971 [Contig_View]  MYH16 [Vega]
TCGA cBioPortalMYH16
AceView (NCBI)MYH16
Genatlas (Paris)MYH16
WikiGenes84176
SOURCE (Princeton)MYH16
Genetics Home Reference (NIH)MYH16
Genomic and cartography
GoldenPath hg38 (UCSC)MYH16  -     chr7:99273301-99297971 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MYH16  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblMYH16 - 7q22.1 [CytoView hg19]  MYH16 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIMYH16 [Mapview hg19]  MYH16 [Mapview hg38]
OMIM608580   
Gene and transcription
Genbank (Entrez)AK025690
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MYH16
Cluster EST : UnigeneHs.621401 [ NCBI ]
CGAP (NCI)Hs.621401
Gene ExpressionMYH16 [ NCBI-GEO ]   MYH16 [ EBI - ARRAY_EXPRESS ]   MYH16 [ SEEK ]   MYH16 [ MEM ]
Gene Expression Viewer (FireBrowse)MYH16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84176
GTEX Portal (Tissue expression)MYH16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6N6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6N6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6N6
Splice isoforms : SwissVarQ9H6N6
PhosPhoSitePlusQ9H6N6
Domains : Interpro (EBI)Myosin-like_IQ_dom    Myosin_tail   
Domain families : Pfam (Sanger)Myosin_tail_1 (PF01576)   
Domain families : Pfam (NCBI)pfam01576   
Conserved Domain (NCBI)MYH16
DMDM Disease mutations84176
Blocks (Seattle)MYH16
SuperfamilyQ9H6N6
Peptide AtlasQ9H6N6
IPIIPI00025094   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6N6
IntAct (EBI)Q9H6N6
BioGRIDMYH16
STRING (EMBL)MYH16
ZODIACMYH16
Ontologies - Pathways
QuickGOQ9H6N6
Ontology : AmiGOmotor activity  myosin complex  
Ontology : EGO-EBImotor activity  myosin complex  
NDEx NetworkMYH16
Atlas of Cancer Signalling NetworkMYH16
Wikipedia pathwaysMYH16
Orthology - Evolution
OrthoDB84176
Phylogenetic Trees/Animal Genes : TreeFamMYH16
HOVERGENQ9H6N6
HOGENOMQ9H6N6
Homologs : HomoloGeneMYH16
Homology/Alignments : Family Browser (UCSC)MYH16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYH16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYH16
dbVarMYH16
ClinVarMYH16
1000_GenomesMYH16 
Exome Variant ServerMYH16
ExAC (Exome Aggregation Consortium)MYH16 (select the gene name)
Genetic variants : HAPMAP84176
Genomic Variants (DGV)MYH16 [DGVbeta]
DECIPHERMYH16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMYH16 
Mutations
ICGC Data PortalMYH16 
TCGA Data PortalMYH16 
Broad Tumor PortalMYH16
OASIS PortalMYH16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYH16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMYH16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYH16
DgiDB (Drug Gene Interaction Database)MYH16
DoCM (Curated mutations)MYH16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYH16 (select a term)
intoGenMYH16
Cancer3DMYH16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608580   
Orphanet
MedgenMYH16
Genetic Testing Registry MYH16
NextProtQ9H6N6 [Medical]
TSGene84176
GENETestsMYH16
Huge Navigator MYH16 [HugePedia]
snp3D : Map Gene to Disease84176
BioCentury BCIQMYH16
ClinGenMYH16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84176
Chemical/Pharm GKB GenePA134925505
Clinical trialMYH16
Miscellaneous
canSAR (ICR)MYH16 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYH16
EVEXMYH16
GoPubMedMYH16
iHOPMYH16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:27:39 CEST 2017

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