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MYL1 (myosin, light chain 1, alkali; skeletal, fast)

Identity

Other namesMLC1F
MLC3F
HGNC (Hugo) MYL1
LocusID (NCBI) 4632
Location 2q34
Location_base_pair Starts at 211154868 and ends at 211179895 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MYL1   7582
Cards
Entrez_Gene (NCBI)MYL1  4632  myosin, light chain 1, alkali; skeletal, fast
GeneCards (Weizmann)MYL1
Ensembl (Hinxton)ENSG00000168530 [Gene_View]  chr2:211154868-211179895 [Contig_View]  MYL1 [Vega]
ICGC DataPortalENSG00000168530
cBioPortalMYL1
AceView (NCBI)MYL1
Genatlas (Paris)MYL1
WikiGenes4632
SOURCE (Princeton)NM_079420 NM_079422
Genomic and cartography
GoldenPath (UCSC)MYL1  -  2q34   chr2:211154868-211179895 -  2q34   [Description]    (hg19-Feb_2009)
EnsemblMYL1 - 2q34 [CytoView]
Mapping of homologs : NCBIMYL1 [Mapview]
OMIM160780   
Gene and transcription
Genbank (Entrez)AA705167 AK311892 AK311942 BC005318 CR456869
RefSeq transcript (Entrez)NM_079420 NM_079422
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NT_005403 NW_001838863 NW_004929305
Consensus coding sequences : CCDS (NCBI)MYL1
Cluster EST : UnigeneHs.187338 [ NCBI ]
CGAP (NCI)Hs.187338
Alternative Splicing : Fast-db (Paris)GSHG0018317
Alternative Splicing GalleryENSG00000168530
Gene ExpressionMYL1 [ NCBI-GEO ]     MYL1 [ SEEK ]   MYL1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05976 (Uniprot)
NextProtP05976  [Medical]
With graphics : InterProP05976
Splice isoforms : SwissVarP05976 (Swissvar)
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair [organisation]   EF_hand_dom [organisation]  
Related proteins : CluSTrP05976
Domain families : Pfam (Sanger)EF-hand_6 (PF13405)   
Domain families : Pfam (NCBI)pfam13405   
Domain families : Smart (EMBL)EFh (SM00054)  
DMDM Disease mutations4632
Blocks (Seattle)P05976
Human Protein AtlasENSG00000168530 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP05976
HPRD01180
IPIIPI00216070   IPI00220332   
Protein Interaction databases
DIP (DOE-UCLA)P05976
IntAct (EBI)P05976
FunCoupENSG00000168530
BioGRIDMYL1
InParanoidP05976
Interologous Interaction database P05976
IntegromeDBMYL1
STRING (EMBL)MYL1
Ontologies - Pathways
Ontology : AmiGOcalcium ion binding  cytosol  muscle myosin complex  muscle contraction  structural constituent of muscle  myofibril  sarcomere  muscle filament sliding  muscle filament sliding  cardiac muscle contraction  
Ontology : EGO-EBIcalcium ion binding  cytosol  muscle myosin complex  muscle contraction  structural constituent of muscle  myofibril  sarcomere  muscle filament sliding  muscle filament sliding  cardiac muscle contraction  
Protein Interaction DatabaseMYL1
Wikipedia pathwaysMYL1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)MYL1
snp3D : Map Gene to Disease4632
SNP (GeneSNP Utah)MYL1
SNP : HGBaseMYL1
Genetic variants : HAPMAPMYL1
Exome VariantMYL1
1000_GenomesMYL1 
ICGC programENSG00000168530 
Somatic Mutations in Cancer : COSMICMYL1 
CONAN: Copy Number AnalysisMYL1 
Mutations and Diseases : HGMDMYL1
Mutations and Diseases : intOGenMYL1
Genomic VariantsMYL1  MYL1 [DGVbeta]
dbVarMYL1
ClinVarMYL1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM160780   
MedgenMYL1
GENETestsMYL1
Disease Genetic AssociationMYL1
Huge Navigator MYL1 [HugePedia]  MYL1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneMYL1
Homology/Alignments : Family Browser (UCSC)MYL1
Phylogenetic Trees/Animal Genes : TreeFamMYL1
Chemical/Protein Interactions : CTD4632
Chemical/Pharm GKB GenePA31379
Clinical trialMYL1
Cancer Resource (Charite)ENSG00000168530
Other databases
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
CoreMineMYL1
iHOPMYL1
OncoSearchMYL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:56:54 CEST 2014

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