Atlas of Genetics and Cytogenetics in Oncology and Haematology

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MYL1 (myosin, light chain 1, alkali; skeletal, fast)

Identity

Other namesMLC1F
MLC3F
HGNC (Hugo) MYL1
LocusID (NCBI) 4632
Location 2q34
Location_base_pair Starts at 211154868 and ends at 211179895 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MYL1   7582
Entrez_Gene (NCBI)MYL1  4632  myosin, light chain 1, alkali; skeletal, fast
Cards
GeneCards (Weizmann)MYL1
Ensembl (Hinxton)ENSG00000168530 [Gene_View]  chr2:211154868-211179895 [Contig_View]  MYL1 [Vega]
AceView (NCBI)MYL1
Genatlas (Paris)MYL1
SOURCE (Stanford)NM_079420 NM_079422
Genomic and cartography
GoldenPath (UCSC)MYL1  -  2q34   chr2:211154868-211179895 -  2q34   [Description]    (hg19-Feb_2009)
EnsemblMYL1 - 2q34 [CytoView]
Mapping of homologs : NCBIMYL1 [Mapview]
OMIM160780   
Gene and transcription
Genbank (Entrez)AA705167 AK311892 AK311942 BC005318 CR456869
RefSeq transcript (SRS)NM_079420 NM_079422
RefSeq transcript (Entrez)NM_079420 NM_079422
RefSeq genomic (SRS)AC_000134 NC_000002 NC_018913 NT_005403 NW_001838863 NW_004078008
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NT_005403 NW_001838863 NW_004078008
Consensus coding sequences : CCDS (NCBI)MYL1
Cluster EST : UnigeneHs.187338 [ SRS ] Hs.187338 [ NCBI ]
CGAP (NCI)Hs.187338
Alternative Splicing : Fast-db (Paris)GSHG0018317
Alternative Splicing GalleryENSG00000168530
Gene ExpressionMYL1 [ NCBI-GEO ]   MYL1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05976 (SRS) P05976 (Uniprot)
NextProtP05976
With graphics : InterProP05976
Splice isoforms : SwissVarP05976(Swissvar)
Domaine pattern : Prosite (SRS)EF_HAND_2 (PS50222)   
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)   
Domains : Interpro (SRS)EF-hand-like_dom    EF_HAND_2    EF_hand_Ca-bd   
Domains : Interpro (EBI)EF-hand-like_dom    EF_HAND_2    EF_hand_Ca-bd   
Related proteins : CluSTrP05976
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)EFh (SM00054)  
DMDM4632
Blocks (Seattle)P05976
Human Protein AtlasENSG00000168530
HPRD01180
IPIIPI00216070   IPI00220332   
Protein Interaction databases
DIP (DOE-UCLA)P05976
IntAct (EBI)P05976
FunCoupENSG00000168530
REACTOMEMYL1
Protein Interaction Database4632
BioGRIDMYL1
InParanoidP05976
Interologous Interaction database P05976
IntegromeDBMYL1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)MYL1
SNP (GeneSNP Utah)MYL1
SNP : HGBaseMYL1
Genetic variants : HAPMAPMYL1
Somatic Mutations in Cancer : COSMICMYL1 
CONAN: Copy Number AnalysisMYL1 
Mutations and Diseases : HGMDMYL1
OMIM160780   
GENETests160780   
Disease Genetic AssociationMYL1
Huge Navigator MYL1 [HugePedia]  MYL1 [HugeCancerGEM]
Genomic VariantsMYL1  MYL1 [DGVbeta]
snp3D : Map Gene to Disease4632
General knowledge
Homologs : HomoloGeneMYL1
Homology/Alignments : Family Browser (UCSC)MYL1
Phylogenetic Trees/Animal Genes : TreeFamMYL1
Chemical/Protein Interactions : CTD4632
Chemical/Pharm GKB GenePA31379
Clinical trialMYL1
Cancer Resource (Charite)ENSG00000168530
Ontology : AmiGOcalcium ion binding  cytosol  muscle myosin complex  muscle contraction  muscle organ development  structural constituent of muscle  myofibril  sarcomere  muscle filament sliding  muscle filament sliding  cardiac muscle contraction  
Ontology : EGO-EBIcalcium ion binding  cytosol  muscle myosin complex  muscle contraction  muscle organ development  structural constituent of muscle  myofibril  sarcomere  muscle filament sliding  muscle filament sliding  cardiac muscle contraction  
Pathways : KEGGRegulation of actin cytoskeleton
Other databases
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
PubGeneMYL1
iHOPMYL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:40:28 CEST 2013
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