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MYL10 (myosin light chain 10)

Identity

Alias_namesmyosin, light chain 10, regulatory
Alias_symbol (synonym)MGC3479
MYLC2PL
PLRLC
Other alias
HGNC (Hugo) MYL10
LocusID (NCBI) 93408
Atlas_Id 70612
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 101613325 and ends at 101629296 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYL10   29825
Cards
Entrez_Gene (NCBI)MYL10  93408  myosin light chain 10
AliasesMYLC2PL; PLRLC
GeneCards (Weizmann)MYL10
Ensembl hg19 (Hinxton)ENSG00000106436 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106436 [Gene_View]  chr7:101613325-101629296 [Contig_View]  MYL10 [Vega]
ICGC DataPortalENSG00000106436
TCGA cBioPortalMYL10
AceView (NCBI)MYL10
Genatlas (Paris)MYL10
WikiGenes93408
SOURCE (Princeton)MYL10
Genetics Home Reference (NIH)MYL10
Genomic and cartography
GoldenPath hg38 (UCSC)MYL10  -     chr7:101613325-101629296 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MYL10  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblMYL10 - 7q22.1 [CytoView hg19]  MYL10 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIMYL10 [Mapview hg19]  MYL10 [Mapview hg38]
OMIM617177   
Gene and transcription
Genbank (Entrez)AM393850 BC002778
RefSeq transcript (Entrez)NM_138403
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MYL10
Cluster EST : UnigeneHs.247831 [ NCBI ]
CGAP (NCI)Hs.247831
Alternative Splicing GalleryENSG00000106436
Gene ExpressionMYL10 [ NCBI-GEO ]   MYL10 [ EBI - ARRAY_EXPRESS ]   MYL10 [ SEEK ]   MYL10 [ MEM ]
Gene Expression Viewer (FireBrowse)MYL10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93408
GTEX Portal (Tissue expression)MYL10
Human Protein AtlasENSG00000106436-MYL10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BUA6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BUA6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BUA6
Splice isoforms : SwissVarQ9BUA6
PhosPhoSitePlusQ9BUA6
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_6 (PF13405)   
Domain families : Pfam (NCBI)pfam13405   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)MYL10
DMDM Disease mutations93408
Blocks (Seattle)MYL10
SuperfamilyQ9BUA6
Human Protein Atlas [tissue]ENSG00000106436-MYL10 [tissue]
Peptide AtlasQ9BUA6
HPRD17620
IPIIPI00165428   
Protein Interaction databases
DIP (DOE-UCLA)Q9BUA6
IntAct (EBI)Q9BUA6
FunCoupENSG00000106436
BioGRIDMYL10
STRING (EMBL)MYL10
ZODIACMYL10
Ontologies - Pathways
QuickGOQ9BUA6
Ontology : AmiGOcalcium ion binding  mitochondrion  cytosol  muscle contraction  
Ontology : EGO-EBIcalcium ion binding  mitochondrion  cytosol  muscle contraction  
Pathways : KEGGFocal adhesion    Tight junction    Leukocyte transendothelial migration    Regulation of actin cytoskeleton   
NDEx NetworkMYL10
Atlas of Cancer Signalling NetworkMYL10
Wikipedia pathwaysMYL10
Orthology - Evolution
OrthoDB93408
GeneTree (enSembl)ENSG00000106436
Phylogenetic Trees/Animal Genes : TreeFamMYL10
HOVERGENQ9BUA6
HOGENOMQ9BUA6
Homologs : HomoloGeneMYL10
Homology/Alignments : Family Browser (UCSC)MYL10
Gene fusions - Rearrangements
Fusion: Tumor Portal MYL10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYL10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYL10
dbVarMYL10
ClinVarMYL10
1000_GenomesMYL10 
Exome Variant ServerMYL10
ExAC (Exome Aggregation Consortium)ENSG00000106436
GNOMAD BrowserENSG00000106436
Genetic variants : HAPMAP93408
Genomic Variants (DGV)MYL10 [DGVbeta]
DECIPHERMYL10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMYL10 
Mutations
ICGC Data PortalMYL10 
TCGA Data PortalMYL10 
Broad Tumor PortalMYL10
OASIS PortalMYL10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYL10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMYL10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYL10
DgiDB (Drug Gene Interaction Database)MYL10
DoCM (Curated mutations)MYL10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYL10 (select a term)
intoGenMYL10
Cancer3DMYL10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617177   
Orphanet
MedgenMYL10
Genetic Testing Registry MYL10
NextProtQ9BUA6 [Medical]
TSGene93408
GENETestsMYL10
Target ValidationMYL10
Huge Navigator MYL10 [HugePedia]
snp3D : Map Gene to Disease93408
BioCentury BCIQMYL10
ClinGenMYL10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93408
Chemical/Pharm GKB GenePA164723254
Clinical trialMYL10
Miscellaneous
canSAR (ICR)MYL10 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYL10
EVEXMYL10
GoPubMedMYL10
iHOPMYL10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:18:20 CET 2017

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