Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MYL2 (myosin light chain 2)

Identity

Other namesCMH10
MLC-2s/v
MLC2
HGNC (Hugo) MYL2
LocusID (NCBI) 4633
Atlas_Id 41479
Location 12q24.11
Location_base_pair Starts at 111348624 and ends at 111358404 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MIR6723 (1p36.33) / MYL2 (12q24.11)MYL2 (12q24.11) / CCDC120 (Xp11.23)MYL2 (12q24.11) / DSE (6q22.1)
MYL2 (12q24.11) / LOC100507412 (-)MYL2 (12q24.11) / SNRPN (15q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYL2   7583
Cards
Entrez_Gene (NCBI)MYL2  4633  myosin light chain 2
AliasesCMH10; MLC-2s/v; MLC2
GeneCards (Weizmann)MYL2
Ensembl hg19 (Hinxton)ENSG00000111245 [Gene_View]  chr12:111348624-111358404 [Contig_View]  MYL2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000111245 [Gene_View]  chr12:111348624-111358404 [Contig_View]  MYL2 [Vega]
ICGC DataPortalENSG00000111245
TCGA cBioPortalMYL2
AceView (NCBI)MYL2
Genatlas (Paris)MYL2
WikiGenes4633
SOURCE (Princeton)MYL2
Genomic and cartography
GoldenPath hg19 (UCSC)MYL2  -     chr12:111348624-111358404 -  12q24.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MYL2  -     12q24.11   [Description]    (hg38-Dec_2013)
EnsemblMYL2 - 12q24.11 [CytoView hg19]  MYL2 - 12q24.11 [CytoView hg38]
Mapping of homologs : NCBIMYL2 [Mapview hg19]  MYL2 [Mapview hg38]
OMIM160781   608758   
Gene and transcription
Genbank (Entrez)AA090235 AF020768 AK312013 BC015821 BC031006
RefSeq transcript (Entrez)NM_000432
RefSeq genomic (Entrez)NC_000012 NC_018923 NG_007554 NT_029419 NW_004929385
Consensus coding sequences : CCDS (NCBI)MYL2
Cluster EST : UnigeneHs.75535 [ NCBI ]
CGAP (NCI)Hs.75535
Alternative Splicing GalleryENSG00000111245
Gene ExpressionMYL2 [ NCBI-GEO ]   MYL2 [ EBI - ARRAY_EXPRESS ]   MYL2 [ SEEK ]   MYL2 [ MEM ]
Gene Expression Viewer (FireBrowse)MYL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4633
GTEX Portal (Tissue expression)MYL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP10916 (Uniprot)
NextProtP10916  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP10916
Splice isoforms : SwissVarP10916 (Swissvar)
PhosPhoSitePlusP10916
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_6 (PF13405)   
Domain families : Pfam (NCBI)pfam13405   
Domain families : Smart (EMBL)EFh (SM00054)  
DMDM Disease mutations4633
Blocks (Seattle)MYL2
SuperfamilyP10916
Human Protein AtlasENSG00000111245
Peptide AtlasP10916
HPRD01181
IPIIPI00216798   IPI01020782   IPI01023048   
Protein Interaction databases
DIP (DOE-UCLA)P10916
IntAct (EBI)P10916
FunCoupENSG00000111245
BioGRIDMYL2
STRING (EMBL)MYL2
ZODIACMYL2
Ontologies - Pathways
QuickGOP10916
Ontology : AmiGOregulation of the force of heart contraction  actin monomer binding  calcium ion binding  protein binding  cytosol  cytoskeleton  regulation of striated muscle contraction  heart development  structural constituent of muscle  post-embryonic development  actin cytoskeleton  myosin complex  myofibril  sarcomere  muscle filament sliding  negative regulation of cell growth  A band  myosin heavy chain binding  muscle cell fate specification  muscle fiber development  cardiac myofibril assembly  ventricular cardiac muscle tissue morphogenesis  heart contraction  cardiac muscle contraction  positive regulation of the force of heart contraction  
Ontology : EGO-EBIregulation of the force of heart contraction  actin monomer binding  calcium ion binding  protein binding  cytosol  cytoskeleton  regulation of striated muscle contraction  heart development  structural constituent of muscle  post-embryonic development  actin cytoskeleton  myosin complex  myofibril  sarcomere  muscle filament sliding  negative regulation of cell growth  A band  myosin heavy chain binding  muscle cell fate specification  muscle fiber development  cardiac myofibril assembly  ventricular cardiac muscle tissue morphogenesis  heart contraction  cardiac muscle contraction  positive regulation of the force of heart contraction  
Pathways : BIOCARTAALK in cardiac myocytes [Genes]    Rho cell motility signaling pathway [Genes]    Erk and PI-3 Kinase Are Necessary for Collagen Binding in Corneal Epithelia [Genes]    CCR3 signaling in Eosinophils [Genes]    mCalpain and friends in Cell motility [Genes]    Rac 1 cell motility signaling pathway [Genes]   
Pathways : KEGGCardiac muscle contraction    Adrenergic signaling in cardiomyocytes    Focal adhesion    Tight junction    Leukocyte transendothelial migration    Regulation of actin cytoskeleton    Hypertrophic cardiomyopathy (HCM)    Dilated cardiomyopathy   
NDEx Network
Atlas of Cancer Signalling NetworkMYL2
Wikipedia pathwaysMYL2
Orthology - Evolution
OrthoDB4633
GeneTree (enSembl)ENSG00000111245
Phylogenetic Trees/Animal Genes : TreeFamMYL2
Homologs : HomoloGeneMYL2
Homology/Alignments : Family Browser (UCSC)MYL2
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerMYL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYL2
dbVarMYL2
ClinVarMYL2
1000_GenomesMYL2 
Exome Variant ServerMYL2
ExAC (Exome Aggregation Consortium)MYL2 (select the gene name)
Genetic variants : HAPMAP4633
Genomic Variants (DGV)MYL2 [DGVbeta]
Mutations
ICGC Data PortalMYL2 
TCGA Data PortalMYL2 
Broad Tumor PortalMYL2
OASIS PortalMYL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYL2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Zhejiang University Center for Genetic and Genomic Medicine (ZJU-CGGM)
BioMutasearch MYL2
DgiDB (Drug Gene Interaction Database)MYL2
DoCM (Curated mutations)MYL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYL2 (select a term)
intoGenMYL2
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)12:111348624-111358404  ENSG00000111245
CONAN: Copy Number AnalysisMYL2 
Mutations and Diseases : HGMDMYL2
OMIM160781    608758   
MedgenMYL2
Genetic Testing Registry MYL2
NextProtP10916 [Medical]
TSGene4633
GENETestsMYL2
Huge Navigator MYL2 [HugePedia]
snp3D : Map Gene to Disease4633
BioCentury BCIQMYL2
ClinGenMYL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4633
Chemical/Pharm GKB GenePA31380
Clinical trialMYL2
Miscellaneous
canSAR (ICR)MYL2 (select the gene name)
Probes
Litterature
PubMed71 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYL2
EVEXMYL2
GoPubMedMYL2
iHOPMYL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat May 28 11:12:55 CEST 2016

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.