Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MYLIP (myosin regulatory light chain interacting protein)

Identity

Alias_symbol (synonym)MIR
IDOL
Other alias
HGNC (Hugo) MYLIP
LocusID (NCBI) 29116
Atlas_Id 70619
Location 6p22.3  [Link to chromosome band 6p22]
Location_base_pair Starts at 16129086 and ends at 16148247 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MYLIP (6p22.3) / MYLIP (6p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYLIP   21155
Cards
Entrez_Gene (NCBI)MYLIP  29116  myosin regulatory light chain interacting protein
AliasesIDOL; MIR
GeneCards (Weizmann)MYLIP
Ensembl hg19 (Hinxton)ENSG00000007944 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000007944 [Gene_View]  ENSG00000007944 [Sequence]  chr6:16129086-16148247 [Contig_View]  MYLIP [Vega]
ICGC DataPortalENSG00000007944
TCGA cBioPortalMYLIP
AceView (NCBI)MYLIP
Genatlas (Paris)MYLIP
WikiGenes29116
SOURCE (Princeton)MYLIP
Genetics Home Reference (NIH)MYLIP
Genomic and cartography
GoldenPath hg38 (UCSC)MYLIP  -     chr6:16129086-16148247 +  6p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MYLIP  -     6p22.3   [Description]    (hg19-Feb_2009)
EnsemblMYLIP - 6p22.3 [CytoView hg19]  MYLIP - 6p22.3 [CytoView hg38]
Mapping of homologs : NCBIMYLIP [Mapview hg19]  MYLIP [Mapview hg38]
OMIM610082   
Gene and transcription
Genbank (Entrez)AF006003 AF187016 AF212221 AF258586 AJ420601
RefSeq transcript (Entrez)NM_013262
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MYLIP
Cluster EST : UnigeneHs.484738 [ NCBI ]
CGAP (NCI)Hs.484738
Alternative Splicing GalleryENSG00000007944
Gene ExpressionMYLIP [ NCBI-GEO ]   MYLIP [ EBI - ARRAY_EXPRESS ]   MYLIP [ SEEK ]   MYLIP [ MEM ]
Gene Expression Viewer (FireBrowse)MYLIP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29116
GTEX Portal (Tissue expression)MYLIP
Human Protein AtlasENSG00000007944-MYLIP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WY64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WY64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WY64
Splice isoforms : SwissVarQ8WY64
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ8WY64
Domaine pattern : Prosite (Expaxy)FERM_3 (PS50057)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Band_41_domain    Ez/rad/moesin-like    FERM/acyl-CoA-bd_prot_3-hlx    FERM_central    FERM_domain    FERM_N    FERM_PH-like_C    PH_dom-like    Ubiquitin-rel_dom    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)FERM_C (PF09380)    FERM_M (PF00373)    FERM_N (PF09379)   
Domain families : Pfam (NCBI)pfam09380    pfam00373    pfam09379   
Domain families : Smart (EMBL)B41 (SM00295)  FERM_C (SM01196)  
Conserved Domain (NCBI)MYLIP
DMDM Disease mutations29116
Blocks (Seattle)MYLIP
PDB (SRS)2YHN    2YHO   
PDB (PDBSum)2YHN    2YHO   
PDB (IMB)2YHN    2YHO   
PDB (RSDB)2YHN    2YHO   
Structural Biology KnowledgeBase2YHN    2YHO   
SCOP (Structural Classification of Proteins)2YHN    2YHO   
CATH (Classification of proteins structures)2YHN    2YHO   
SuperfamilyQ8WY64
Human Protein Atlas [tissue]ENSG00000007944-MYLIP [tissue]
Peptide AtlasQ8WY64
HPRD17621
IPIIPI00242339   IPI00642265   
Protein Interaction databases
DIP (DOE-UCLA)Q8WY64
IntAct (EBI)Q8WY64
FunCoupENSG00000007944
BioGRIDMYLIP
STRING (EMBL)MYLIP
ZODIACMYLIP
Ontologies - Pathways
QuickGOQ8WY64
Ontology : AmiGO###############################################################################################################################################################################################################################################################  
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################  
Pathways : KEGGTryptophan metabolism   
NDEx NetworkMYLIP
Atlas of Cancer Signalling NetworkMYLIP
Wikipedia pathwaysMYLIP
Orthology - Evolution
OrthoDB29116
GeneTree (enSembl)ENSG00000007944
Phylogenetic Trees/Animal Genes : TreeFamMYLIP
HOVERGENQ8WY64
HOGENOMQ8WY64
Homologs : HomoloGeneMYLIP
Homology/Alignments : Family Browser (UCSC)MYLIP
Gene fusions - Rearrangements
Fusion : QuiverMYLIP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYLIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYLIP
dbVarMYLIP
ClinVarMYLIP
1000_GenomesMYLIP 
Exome Variant ServerMYLIP
ExAC (Exome Aggregation Consortium)ENSG00000007944
GNOMAD BrowserENSG00000007944
Varsome BrowserMYLIP
Genetic variants : HAPMAP29116
Genomic Variants (DGV)MYLIP [DGVbeta]
DECIPHERMYLIP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMYLIP 
Mutations
ICGC Data PortalMYLIP 
TCGA Data PortalMYLIP 
Broad Tumor PortalMYLIP
OASIS PortalMYLIP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYLIP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMYLIP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYLIP
DgiDB (Drug Gene Interaction Database)MYLIP
DoCM (Curated mutations)MYLIP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYLIP (select a term)
intoGenMYLIP
Cancer3DMYLIP(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610082   
Orphanet
DisGeNETMYLIP
MedgenMYLIP
Genetic Testing Registry MYLIP
NextProtQ8WY64 [Medical]
TSGene29116
GENETestsMYLIP
Target ValidationMYLIP
Huge Navigator MYLIP [HugePedia]
snp3D : Map Gene to Disease29116
BioCentury BCIQMYLIP
ClinGenMYLIP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29116
Chemical/Pharm GKB GenePA134942677
Clinical trialMYLIP
Miscellaneous
canSAR (ICR)MYLIP (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYLIP
EVEXMYLIP
GoPubMedMYLIP
iHOPMYLIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:19:10 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.