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MYO15B (myosin XVB)

Identity

Alias_namesmyosin XVB pseudogene
Alias_symbol (synonym)MYO15BP
Other alias
HGNC (Hugo) MYO15B
LocusID (NCBI) 80022
Atlas_Id 54482
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 75588058 and ends at 75626847 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATG13 (11p11.2) / MYO15B (17q25.1)CDH11 (16q21) / MYO15B (17q25.1)ITGB4 (17q25.1) / MYO15B (17q25.1)
MYO15B (17q25.1) / CDH1 (16q22.1)MYO15B (17q25.1) / MAP3K3 (17q23.3)MYO15B (17q25.1) / NUP85 (17q25.1)
UNK (17q25.1) / MYO15B (17q25.1)ITGB4 17q25.1 / MYO15B 17q25.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYO15B   14083
Cards
Entrez_Gene (NCBI)MYO15B  80022  myosin XVB
AliasesMYO15BP
GeneCards (Weizmann)MYO15B
Ensembl hg19 (Hinxton)ENSG00000266714 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000266714 [Gene_View]  chr17:75588058-75626847 [Contig_View]  MYO15B [Vega]
ICGC DataPortalENSG00000266714
TCGA cBioPortalMYO15B
AceView (NCBI)MYO15B
Genatlas (Paris)MYO15B
WikiGenes80022
SOURCE (Princeton)MYO15B
Genetics Home Reference (NIH)MYO15B
Genomic and cartography
GoldenPath hg38 (UCSC)MYO15B  -     chr17:75588058-75626847 +  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MYO15B  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblMYO15B - 17q25.1 [CytoView hg19]  MYO15B - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIMYO15B [Mapview hg19]  MYO15B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB058686 AB384291 AF418286 AF418287 AF418288
RefSeq transcript (Entrez)NM_001080847 NM_001309242
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MYO15B
Cluster EST : UnigeneHs.390817 [ NCBI ]
CGAP (NCI)Hs.390817
Alternative Splicing GalleryENSG00000266714
Gene ExpressionMYO15B [ NCBI-GEO ]   MYO15B [ EBI - ARRAY_EXPRESS ]   MYO15B [ SEEK ]   MYO15B [ MEM ]
Gene Expression Viewer (FireBrowse)MYO15B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80022
GTEX Portal (Tissue expression)MYO15B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JP2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JP2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JP2
Splice isoforms : SwissVarQ96JP2
PhosPhoSitePlusQ96JP2
Domaine pattern : Prosite (Expaxy)IQ (PS50096)    MYOSIN_MOTOR (PS51456)    MYTH4 (PS51016)    SH3 (PS50002)   
Domains : Interpro (EBI)IQ_motif_EF-hand-BS    Myosin_head_motor_dom    MyTH4_dom    P-loop_NTPase    SH3_2    SH3_domain   
Domain families : Pfam (Sanger)Myosin_head (PF00063)    MyTH4 (PF00784)    SH3_2 (PF07653)   
Domain families : Pfam (NCBI)pfam00063    pfam00784    pfam07653   
Domain families : Smart (EMBL)MYSc (SM00242)  MyTH4 (SM00139)  SH3 (SM00326)  
Conserved Domain (NCBI)MYO15B
DMDM Disease mutations80022
Blocks (Seattle)MYO15B
PDB (SRS)2DLP   
PDB (PDBSum)2DLP   
PDB (IMB)2DLP   
PDB (RSDB)2DLP   
Structural Biology KnowledgeBase2DLP   
SCOP (Structural Classification of Proteins)2DLP   
CATH (Classification of proteins structures)2DLP   
SuperfamilyQ96JP2
Human Protein AtlasENSG00000266714
Peptide AtlasQ96JP2
IPIIPI00939329   
Protein Interaction databases
DIP (DOE-UCLA)Q96JP2
IntAct (EBI)Q96JP2
FunCoupENSG00000266714
BioGRIDMYO15B
STRING (EMBL)MYO15B
ZODIACMYO15B
Ontologies - Pathways
QuickGOQ96JP2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMYO15B
Atlas of Cancer Signalling NetworkMYO15B
Wikipedia pathwaysMYO15B
Orthology - Evolution
OrthoDB80022
GeneTree (enSembl)ENSG00000266714
Phylogenetic Trees/Animal Genes : TreeFamMYO15B
HOVERGENQ96JP2
HOGENOMQ96JP2
Homologs : HomoloGeneMYO15B
Homology/Alignments : Family Browser (UCSC)MYO15B
Gene fusions - Rearrangements
Fusion : MitelmanITGB4/MYO15B [17q25.1/17q25.1]  [t(17;17)(q25;q25)]  
Fusion : MitelmanMYO15B/MAP3K3 [17q25.1/17q23.3]  [t(17;17)(q23;q25)]  
Fusion : MitelmanMYO15B/NUP85 [17q25.1/17q25.1]  [t(17;17)(q25;q25)]  
Fusion : MitelmanUNK/MYO15B [17q25.1/17q25.1]  [dup(17)(q25q25)]  
Fusion: TCGAITGB4 17q25.1 MYO15B 17q25.1 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYO15B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYO15B
dbVarMYO15B
ClinVarMYO15B
1000_GenomesMYO15B 
Exome Variant ServerMYO15B
ExAC (Exome Aggregation Consortium)MYO15B (select the gene name)
Genetic variants : HAPMAP80022
Genomic Variants (DGV)MYO15B [DGVbeta]
DECIPHERMYO15B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMYO15B 
Mutations
ICGC Data PortalMYO15B 
TCGA Data PortalMYO15B 
Broad Tumor PortalMYO15B
OASIS PortalMYO15B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYO15B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMYO15B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYO15B
DgiDB (Drug Gene Interaction Database)MYO15B
DoCM (Curated mutations)MYO15B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYO15B (select a term)
intoGenMYO15B
Cancer3DMYO15B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMYO15B
Genetic Testing Registry MYO15B
NextProtQ96JP2 [Medical]
TSGene80022
GENETestsMYO15B
Target ValidationMYO15B
Huge Navigator MYO15B [HugePedia]
snp3D : Map Gene to Disease80022
BioCentury BCIQMYO15B
ClinGenMYO15B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80022
Chemical/Pharm GKB GenePA31396
Clinical trialMYO15B
Miscellaneous
canSAR (ICR)MYO15B (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYO15B
EVEXMYO15B
GoPubMedMYO15B
iHOPMYO15B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:45:50 CEST 2017

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