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MYO16 (myosin XVI)

Identity

Alias_symbol (synonym)MYR8
KIAA0865
Myo16b
NYAP3
PPP1R107
Other aliasMYAP3
HGNC (Hugo) MYO16
LocusID (NCBI) 23026
Atlas_Id 56359
Location 13q33.3  [Link to chromosome band 13q33]
Location_base_pair Starts at 109281571 and ends at 109860355 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANKRD10 (13q34) / MYO16 (13q33.3)GPR158 (10p12.1) / MYO16 (13q33.3)TRAF3 (14q32.32) / MYO16 (13q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYO16   29822
Cards
Entrez_Gene (NCBI)MYO16  23026  myosin XVI
AliasesMYAP3; MYR8; Myo16b; NYAP3; 
PPP1R107
GeneCards (Weizmann)MYO16
Ensembl hg19 (Hinxton)ENSG00000041515 [Gene_View]  chr13:109281571-109860355 [Contig_View]  MYO16 [Vega]
Ensembl hg38 (Hinxton)ENSG00000041515 [Gene_View]  chr13:109281571-109860355 [Contig_View]  MYO16 [Vega]
ICGC DataPortalENSG00000041515
TCGA cBioPortalMYO16
AceView (NCBI)MYO16
Genatlas (Paris)MYO16
WikiGenes23026
SOURCE (Princeton)MYO16
Genetics Home Reference (NIH)MYO16
Genomic and cartography
GoldenPath hg19 (UCSC)MYO16  -     chr13:109281571-109860355 +  13q33.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MYO16  -     13q33.3   [Description]    (hg38-Dec_2013)
EnsemblMYO16 - 13q33.3 [CytoView hg19]  MYO16 - 13q33.3 [CytoView hg38]
Mapping of homologs : NCBIMYO16 [Mapview hg19]  MYO16 [Mapview hg38]
OMIM615479   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001198950 NM_015011
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MYO16
Cluster EST : UnigeneHs.656587 [ NCBI ]
CGAP (NCI)Hs.656587
Alternative Splicing GalleryENSG00000041515
Gene ExpressionMYO16 [ NCBI-GEO ]   MYO16 [ EBI - ARRAY_EXPRESS ]   MYO16 [ SEEK ]   MYO16 [ MEM ]
Gene Expression Viewer (FireBrowse)MYO16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23026
GTEX Portal (Tissue expression)MYO16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6X6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6X6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6X6
Splice isoforms : SwissVarQ9Y6X6
PhosPhoSitePlusQ9Y6X6
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    IQ (PS50096)    MYOSIN_MOTOR (PS51456)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    IQ_motif_EF-hand-BS    Myosin_head_motor_dom    P-loop_NTPase   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    Myosin_head (PF00063)   
Domain families : Pfam (NCBI)pfam12796    pfam00063   
Domain families : Smart (EMBL)ANK (SM00248)  MYSc (SM00242)  
Conserved Domain (NCBI)MYO16
DMDM Disease mutations23026
Blocks (Seattle)MYO16
SuperfamilyQ9Y6X6
Human Protein AtlasENSG00000041515
Peptide AtlasQ9Y6X6
HPRD14795
IPIIPI00444012   IPI00847384   IPI00328367   IPI00871216   IPI01010272   IPI00980837   IPI00643872   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6X6
IntAct (EBI)Q9Y6X6
FunCoupENSG00000041515
BioGRIDMYO16
STRING (EMBL)MYO16
ZODIACMYO16
Ontologies - Pathways
QuickGOQ9Y6X6
Ontology : AmiGOmotor activity  ATP binding  nucleoplasm  cytoplasm  plasma membrane  negative regulation of cell proliferation  myosin complex  cerebellum development  perinuclear region of cytoplasm  actin filament binding  negative regulation of G1/S transition of mitotic cell cycle  
Ontology : EGO-EBImotor activity  ATP binding  nucleoplasm  cytoplasm  plasma membrane  negative regulation of cell proliferation  myosin complex  cerebellum development  perinuclear region of cytoplasm  actin filament binding  negative regulation of G1/S transition of mitotic cell cycle  
NDEx NetworkMYO16
Atlas of Cancer Signalling NetworkMYO16
Wikipedia pathwaysMYO16
Orthology - Evolution
OrthoDB23026
GeneTree (enSembl)ENSG00000041515
Phylogenetic Trees/Animal Genes : TreeFamMYO16
HOVERGENQ9Y6X6
HOGENOMQ9Y6X6
Homologs : HomoloGeneMYO16
Homology/Alignments : Family Browser (UCSC)MYO16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYO16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYO16
dbVarMYO16
ClinVarMYO16
1000_GenomesMYO16 
Exome Variant ServerMYO16
ExAC (Exome Aggregation Consortium)MYO16 (select the gene name)
Genetic variants : HAPMAP23026
Genomic Variants (DGV)MYO16 [DGVbeta]
DECIPHER (Syndromes)13:109281571-109860355  ENSG00000041515
CONAN: Copy Number AnalysisMYO16 
Mutations
ICGC Data PortalMYO16 
TCGA Data PortalMYO16 
Broad Tumor PortalMYO16
OASIS PortalMYO16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYO16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMYO16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYO16
DgiDB (Drug Gene Interaction Database)MYO16
DoCM (Curated mutations)MYO16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYO16 (select a term)
intoGenMYO16
Cancer3DMYO16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615479   
Orphanet
MedgenMYO16
Genetic Testing Registry MYO16
NextProtQ9Y6X6 [Medical]
TSGene23026
GENETestsMYO16
Huge Navigator MYO16 [HugePedia]
snp3D : Map Gene to Disease23026
BioCentury BCIQMYO16
ClinGenMYO16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23026
Chemical/Pharm GKB GenePA162396437
Clinical trialMYO16
Miscellaneous
canSAR (ICR)MYO16 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYO16
EVEXMYO16
GoPubMedMYO16
iHOPMYO16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:17:52 CET 2017

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