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MYO1D (myosin ID)

Identity

Alias (NCBI)PPP1R108
myr4
HGNC (Hugo) MYO1D
HGNC Alias symbKIAA0727
myr4
PPP1R108
HGNC Alias nameprotein phosphatase 1, regulatory subunit 108
LocusID (NCBI) 4642
Atlas_Id 70629
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 32492522 and ends at 32877124 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C16orf58 (16p11.2) / MYO1D (17q11.2)GPATCH8 (17q21.31) / MYO1D (17q11.2)KMT5B (11q13.2) / MYO1D (17q11.2)
MBP (18q23) / MYO1D (17q11.2)MYO1D (17q11.2) / ACACA (17q12)MYO1D (17q11.2) / ASIC2 (17q11.2)
MYO1D (17q11.2) / CLTC (17q23.1)MYO1D (17q11.2) / FCMR (1q32.1)MYO1D (17q11.2) / MSRA (8p23.1)
MYO1D (17q11.2) / PLA2G6 (22q13.1)MYO1D (17q11.2) / SCAF8 (6q25.2)MYO1D (17q11.2) / SSH2 (17q11.2)
MYO1D (17q11.2) / TEX2 (17q23.3)MYO1D (17q11.2) / TMIGD1 (17q11.2)PPDPF (20q13.33) / MYO1D (17q11.2)
PSD3 (8p22) / MYO1D (17q11.2)RARA (17q21.2) / MYO1D (17q11.2)SMARCA4 (19p13.2) / MYO1D (17q11.2)
TADA2A (17q12) / MYO1D (17q11.2)MYO1D FAIM3MYO1D SSH2
MYO1D TMIGD1MYO1D ACACAMYO1D TEX2
MYO1D PLA2G6MYO1D ACCN1SUV420H1 MYO1D
RARA MYO1DTADA2A MYO1DGPATCH8 MYO1D

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)MYO1D   7598
Cards
Entrez_Gene (NCBI)MYO1D    myosin ID
AliasesPPP1R108; myr4
GeneCards (Weizmann)MYO1D
Ensembl hg19 (Hinxton)ENSG00000176658 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176658 [Gene_View]  ENSG00000176658 [Sequence]  chr17:32492522-32877124 [Contig_View]  MYO1D [Vega]
ICGC DataPortalENSG00000176658
TCGA cBioPortalMYO1D
AceView (NCBI)MYO1D
Genatlas (Paris)MYO1D
SOURCE (Princeton)MYO1D
Genetics Home Reference (NIH)MYO1D
Genomic and cartography
GoldenPath hg38 (UCSC)MYO1D  -     chr17:32492522-32877124 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MYO1D  -     17q11.2   [Description]    (hg19-Feb_2009)
GoldenPathMYO1D - 17q11.2 [CytoView hg19]  MYO1D - 17q11.2 [CytoView hg38]
ImmunoBaseENSG00000176658
Genome Data Viewer NCBIMYO1D [Mapview hg19]  
OMIM606539   
Gene and transcription
Genbank (Entrez)AB018270 AK026907 AK026920 AK127942 BC030602
RefSeq transcript (Entrez)NM_001303279 NM_001303280 NM_015194
Consensus coding sequences : CCDS (NCBI)MYO1D
Gene ExpressionMYO1D [ NCBI-GEO ]   MYO1D [ EBI - ARRAY_EXPRESS ]   MYO1D [ SEEK ]   MYO1D [ MEM ]
Gene Expression Viewer (FireBrowse)MYO1D [ Firebrowse - Broad ]
GenevisibleExpression of MYO1D in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4642
GTEX Portal (Tissue expression)MYO1D
Human Protein AtlasENSG00000176658-MYO1D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94832   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94832  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94832
PhosPhoSitePlusO94832
Domaine pattern : Prosite (Expaxy)IQ (PS50096)    MYOSIN_MOTOR (PS51456)    TH1 (PS51757)   
Domains : Interpro (EBI)IQ_motif_EF-hand-BS    Kinesin_motor_dom_sf    Myosin_head_motor_dom    Myosin_TH1    MYSc_Myo1    P-loop_NTPase   
Domain families : Pfam (Sanger)IQ (PF00612)    Myosin_head (PF00063)    Myosin_TH1 (PF06017)   
Domain families : Pfam (NCBI)pfam00612    pfam00063    pfam06017   
Domain families : Smart (EMBL)IQ (SM00015)  MYSc (SM00242)  
Conserved Domain (NCBI)MYO1D
SuperfamilyO94832
AlphaFold pdb e-kbO94832   
Human Protein Atlas [tissue]ENSG00000176658-MYO1D [tissue]
HPRD07581
Protein Interaction databases
DIP (DOE-UCLA)O94832
IntAct (EBI)O94832
BioGRIDMYO1D
STRING (EMBL)MYO1D
ZODIACMYO1D
Ontologies - Pathways
QuickGOO94832
Ontology : AmiGOmicrofilament motor activity  microfilament motor activity  calmodulin binding  ATP binding  cytoplasm  endosome  early endosome  smooth endoplasmic reticulum  cytosol  plasma membrane  microvillus  brush border  cell cortex  actin filament organization  protein transport  actin cytoskeleton  basolateral plasma membrane  myosin complex  protein domain specific binding  vesicle transport along actin filament  axon  axolemma  forebrain development  cytoplasmic vesicle  vesicle  neuron projection  neuronal cell body  perikaryon  myelin sheath  plasma membrane raft  calcium-dependent protein binding  actin filament binding  actin filament binding  cellular localization  early endosome to recycling endosome transport  extracellular exosome  apical dendrite  
Ontology : EGO-EBImicrofilament motor activity  microfilament motor activity  calmodulin binding  ATP binding  cytoplasm  endosome  early endosome  smooth endoplasmic reticulum  cytosol  plasma membrane  microvillus  brush border  cell cortex  actin filament organization  protein transport  actin cytoskeleton  basolateral plasma membrane  myosin complex  protein domain specific binding  vesicle transport along actin filament  axon  axolemma  forebrain development  cytoplasmic vesicle  vesicle  neuron projection  neuronal cell body  perikaryon  myelin sheath  plasma membrane raft  calcium-dependent protein binding  actin filament binding  actin filament binding  cellular localization  early endosome to recycling endosome transport  extracellular exosome  apical dendrite  
NDEx NetworkMYO1D
Atlas of Cancer Signalling NetworkMYO1D
Wikipedia pathwaysMYO1D
Orthology - Evolution
OrthoDB4642
GeneTree (enSembl)ENSG00000176658
Phylogenetic Trees/Animal Genes : TreeFamMYO1D
Homologs : HomoloGeneMYO1D
Homology/Alignments : Family Browser (UCSC)MYO1D
Gene fusions - Rearrangements
Fusion : QuiverMYO1D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYO1D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYO1D
dbVarMYO1D
ClinVarMYO1D
MonarchMYO1D
1000_GenomesMYO1D 
Exome Variant ServerMYO1D
GNOMAD BrowserENSG00000176658
Varsome BrowserMYO1D
ACMGMYO1D variants
VarityO94832
Genomic Variants (DGV)MYO1D [DGVbeta]
DECIPHERMYO1D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMYO1D 
Mutations
ICGC Data PortalMYO1D 
TCGA Data PortalMYO1D 
Broad Tumor PortalMYO1D
OASIS PortalMYO1D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYO1D  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMYO1D
Mutations and Diseases : HGMDMYO1D
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMYO1D
DgiDB (Drug Gene Interaction Database)MYO1D
DoCM (Curated mutations)MYO1D
CIViC (Clinical Interpretations of Variants in Cancer)MYO1D
Cancer3DMYO1D
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606539   
Orphanet
DisGeNETMYO1D
MedgenMYO1D
Genetic Testing Registry MYO1D
NextProtO94832 [Medical]
GENETestsMYO1D
Target ValidationMYO1D
Huge Navigator MYO1D [HugePedia]
ClinGenMYO1D
Clinical trials, drugs, therapy
MyCancerGenomeMYO1D
Protein Interactions : CTDMYO1D
Pharm GKB GenePA31400
PharosO94832
Clinical trialMYO1D
Miscellaneous
canSAR (ICR)MYO1D
HarmonizomeMYO1D
DataMed IndexMYO1D
Probes
Litterature
PubMed61 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMYO1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:12:12 CEST 2021

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