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MYO1D (myosin ID)

Identity

Alias_symbol (synonym)KIAA0727
myr4
PPP1R108
Other alias
HGNC (Hugo) MYO1D
LocusID (NCBI) 4642
Atlas_Id 70629
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 32594195 and ends at 32877173 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C16orf58 (16p11.2) / MYO1D (17q11.2)GPATCH8 (17q21.31) / MYO1D (17q11.2)KMT5B (11q13.2) / MYO1D (17q11.2)
MBP (18q23) / MYO1D (17q11.2)MYO1D (17q11.2) / ACACA (17q12)MYO1D (17q11.2) / ASIC2 (17q11.2)
MYO1D (17q11.2) / CLTC (17q23.1)MYO1D (17q11.2) / FCMR (1q32.1)MYO1D (17q11.2) / MSRA (8p23.1)
MYO1D (17q11.2) / PLA2G6 (22q13.1)MYO1D (17q11.2) / SCAF8 (6q25.2)MYO1D (17q11.2) / SSH2 (17q11.2)
MYO1D (17q11.2) / TEX2 (17q23.3)MYO1D (17q11.2) / TMIGD1 (17q11.2)PPDPF (20q13.33) / MYO1D (17q11.2)
PSD3 (8p22) / MYO1D (17q11.2)RARA (17q21.2) / MYO1D (17q11.2)SMARCA4 (19p13.2) / MYO1D (17q11.2)
TADA2A (17q12) / MYO1D (17q11.2)MYO1D FAIM3MYO1D SSH2
MYO1D TMIGD1MYO1D ACACAMYO1D TEX2
MYO1D PLA2G6MYO1D ACCN1SUV420H1 MYO1D
RARA MYO1DTADA2A MYO1DGPATCH8 MYO1D

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYO1D   7598
Cards
Entrez_Gene (NCBI)MYO1D  4642  myosin ID
AliasesPPP1R108; myr4
GeneCards (Weizmann)MYO1D
Ensembl hg19 (Hinxton)ENSG00000176658 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176658 [Gene_View]  chr17:32594195-32877173 [Contig_View]  MYO1D [Vega]
ICGC DataPortalENSG00000176658
TCGA cBioPortalMYO1D
AceView (NCBI)MYO1D
Genatlas (Paris)MYO1D
WikiGenes4642
SOURCE (Princeton)MYO1D
Genetics Home Reference (NIH)MYO1D
Genomic and cartography
GoldenPath hg38 (UCSC)MYO1D  -     chr17:32594195-32877173 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MYO1D  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblMYO1D - 17q11.2 [CytoView hg19]  MYO1D - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBIMYO1D [Mapview hg19]  MYO1D [Mapview hg38]
OMIM606539   
Gene and transcription
Genbank (Entrez)AB018270 AK026907 AK026920 AK127942 BC030602
RefSeq transcript (Entrez)NM_001303279 NM_001303280 NM_015194
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MYO1D
Cluster EST : UnigeneHs.602063 [ NCBI ]
CGAP (NCI)Hs.602063
Alternative Splicing GalleryENSG00000176658
Gene ExpressionMYO1D [ NCBI-GEO ]   MYO1D [ EBI - ARRAY_EXPRESS ]   MYO1D [ SEEK ]   MYO1D [ MEM ]
Gene Expression Viewer (FireBrowse)MYO1D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4642
GTEX Portal (Tissue expression)MYO1D
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94832   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94832  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94832
Splice isoforms : SwissVarO94832
PhosPhoSitePlusO94832
Domaine pattern : Prosite (Expaxy)IQ (PS50096)    MYOSIN_MOTOR (PS51456)    TH1 (PS51757)   
Domains : Interpro (EBI)IQ_motif_EF-hand-BS    Myosin_head_motor_dom    Myosin_TH1    P-loop_NTPase   
Domain families : Pfam (Sanger)IQ (PF00612)    Myosin_head (PF00063)    Myosin_TH1 (PF06017)   
Domain families : Pfam (NCBI)pfam00612    pfam00063    pfam06017   
Domain families : Smart (EMBL)IQ (SM00015)  MYSc (SM00242)  
Conserved Domain (NCBI)MYO1D
DMDM Disease mutations4642
Blocks (Seattle)MYO1D
SuperfamilyO94832
Human Protein AtlasENSG00000176658
Peptide AtlasO94832
HPRD07581
IPIIPI00329719   IPI00412487   
Protein Interaction databases
DIP (DOE-UCLA)O94832
IntAct (EBI)O94832
FunCoupENSG00000176658
BioGRIDMYO1D
STRING (EMBL)MYO1D
ZODIACMYO1D
Ontologies - Pathways
QuickGOO94832
Ontology : AmiGOmicrofilament motor activity  calmodulin binding  ATP binding  endosome  smooth endoplasmic reticulum  cytosol  brush border  negative regulation of phosphatase activity  basolateral plasma membrane  myosin complex  protein domain specific binding  axon  axolemma  actin-dependent ATPase activity  forebrain development  cytoplasmic vesicle  neuron projection  neuronal cell body  myelin sheath  plasma membrane raft  calcium-dependent protein binding  actin filament binding  cellular localization  early endosome to recycling endosome transport  extracellular exosome  apical dendrite  
Ontology : EGO-EBImicrofilament motor activity  calmodulin binding  ATP binding  endosome  smooth endoplasmic reticulum  cytosol  brush border  negative regulation of phosphatase activity  basolateral plasma membrane  myosin complex  protein domain specific binding  axon  axolemma  actin-dependent ATPase activity  forebrain development  cytoplasmic vesicle  neuron projection  neuronal cell body  myelin sheath  plasma membrane raft  calcium-dependent protein binding  actin filament binding  cellular localization  early endosome to recycling endosome transport  extracellular exosome  apical dendrite  
NDEx NetworkMYO1D
Atlas of Cancer Signalling NetworkMYO1D
Wikipedia pathwaysMYO1D
Orthology - Evolution
OrthoDB4642
GeneTree (enSembl)ENSG00000176658
Phylogenetic Trees/Animal Genes : TreeFamMYO1D
HOVERGENO94832
HOGENOMO94832
Homologs : HomoloGeneMYO1D
Homology/Alignments : Family Browser (UCSC)MYO1D
Gene fusions - Rearrangements
Fusion: TCGAMYO1D FAIM3
Fusion: TCGAMYO1D SSH2
Fusion: TCGAMYO1D TMIGD1
Fusion: TCGAMYO1D ACACA
Fusion: TCGAMYO1D TEX2
Fusion: TCGAMYO1D PLA2G6
Fusion: TCGAMYO1D ACCN1
Fusion: TCGASUV420H1 MYO1D
Fusion: TCGARARA MYO1D
Fusion: TCGATADA2A MYO1D
Fusion: TCGAGPATCH8 MYO1D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYO1D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYO1D
dbVarMYO1D
ClinVarMYO1D
1000_GenomesMYO1D 
Exome Variant ServerMYO1D
ExAC (Exome Aggregation Consortium)MYO1D (select the gene name)
Genetic variants : HAPMAP4642
Genomic Variants (DGV)MYO1D [DGVbeta]
DECIPHERMYO1D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMYO1D 
Mutations
ICGC Data PortalMYO1D 
TCGA Data PortalMYO1D 
Broad Tumor PortalMYO1D
OASIS PortalMYO1D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYO1D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMYO1D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYO1D
DgiDB (Drug Gene Interaction Database)MYO1D
DoCM (Curated mutations)MYO1D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYO1D (select a term)
intoGenMYO1D
Cancer3DMYO1D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606539   
Orphanet
MedgenMYO1D
Genetic Testing Registry MYO1D
NextProtO94832 [Medical]
TSGene4642
GENETestsMYO1D
Target ValidationMYO1D
Huge Navigator MYO1D [HugePedia]
snp3D : Map Gene to Disease4642
BioCentury BCIQMYO1D
ClinGenMYO1D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4642
Chemical/Pharm GKB GenePA31400
Clinical trialMYO1D
Miscellaneous
canSAR (ICR)MYO1D (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYO1D
EVEXMYO1D
GoPubMedMYO1D
iHOPMYO1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:36 CEST 2017

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