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MYO1F (myosin IF)

Identity

Alias (NCBI)-
HGNC (Hugo) MYO1F
LocusID (NCBI) 4542
Atlas_Id 54484
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 8520788 and ends at 8577442 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C1QC (1p36.12)::MYO1F (19p13.2)KMT2A (11q23.3)::MYO1F (19p13.2)LOC643339 (12q22)::MYO1F (19p13.2)
ZNF335 (20q13.12)::MYO1F (19p13.2)ZNF414 (19p13.2)::MYO1F (19p13.2)KMT2A 11q23.3::MYO1F 19p13.2
ZNF414 19p13.2::MYO1F 19p13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(11;19)(q23;p13) KMT2A::MYO1F

External links

 

Nomenclature
HGNC (Hugo)MYO1F   7600
Cards
Entrez_Gene (NCBI)MYO1F    myosin IF
Aliases
GeneCards (Weizmann)MYO1F
Ensembl hg19 (Hinxton)ENSG00000142347 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142347 [Gene_View]  ENSG00000142347 [Sequence]  chr19:8520788-8577442 [Contig_View]  MYO1F [Vega]
ICGC DataPortalENSG00000142347
TCGA cBioPortalMYO1F
AceView (NCBI)MYO1F
Genatlas (Paris)MYO1F
SOURCE (Princeton)MYO1F
Genetics Home Reference (NIH)MYO1F
Genomic and cartography
GoldenPath hg38 (UCSC)MYO1F  -     chr19:8520788-8577442 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MYO1F  -     19p13.2   [Description]    (hg19-Feb_2009)
GoldenPathMYO1F - 19p13.2 [CytoView hg19]  MYO1F - 19p13.2 [CytoView hg38]
ImmunoBaseENSG00000142347
Genome Data Viewer NCBIMYO1F [Mapview hg19]  
OMIM601480   
Gene and transcription
Genbank (Entrez)AB210037 AB290178 AJ310570 AK131106 AK301166
RefSeq transcript (Entrez)NM_001348355 NM_012335
Consensus coding sequences : CCDS (NCBI)MYO1F
Gene ExpressionMYO1F [ NCBI-GEO ]   MYO1F [ EBI - ARRAY_EXPRESS ]   MYO1F [ SEEK ]   MYO1F [ MEM ]
Gene Expression Viewer (FireBrowse)MYO1F [ Firebrowse - Broad ]
GenevisibleExpression of MYO1F in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4542
GTEX Portal (Tissue expression)MYO1F
Human Protein AtlasENSG00000142347-MYO1F [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00160   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00160  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00160
PhosPhoSitePlusO00160
Domaine pattern : Prosite (Expaxy)IQ (PS50096)    MYOSIN_MOTOR (PS51456)    SH3 (PS50002)    TH1 (PS51757)   
Domains : Interpro (EBI)Ie/If_SH3    IQ_motif_EF-hand-BS    Kinesin_motor_dom_sf    Myosin_head_motor_dom    Myosin_TH1    MYSc_Myo1    P-loop_NTPase    SH3-like_dom_sf    SH3_domain   
Domain families : Pfam (Sanger)Myosin_head (PF00063)    Myosin_TH1 (PF06017)    SH3_1 (PF00018)   
Domain families : Pfam (NCBI)pfam00063    pfam06017    pfam00018   
Domain families : Smart (EMBL)MYSc (SM00242)  SH3 (SM00326)  
Conserved Domain (NCBI)MYO1F
SuperfamilyO00160
AlphaFold pdb e-kbO00160   
Human Protein Atlas [tissue]ENSG00000142347-MYO1F [tissue]
HPRD03282
Protein Interaction databases
DIP (DOE-UCLA)O00160
IntAct (EBI)O00160
BioGRIDMYO1F
STRING (EMBL)MYO1F
ZODIACMYO1F
Ontologies - Pathways
QuickGOO00160
Ontology : AmiGOmicrofilament motor activity  actin binding  protein binding  calmodulin binding  ATP binding  cytoplasm  cytosol  plasma membrane  microvillus  actin filament organization  biological_process  actin cytoskeleton  unconventional myosin complex  vesicle transport along actin filament  vesicle  actin filament binding  
Ontology : EGO-EBImicrofilament motor activity  actin binding  protein binding  calmodulin binding  ATP binding  cytoplasm  cytosol  plasma membrane  microvillus  actin filament organization  biological_process  actin cytoskeleton  unconventional myosin complex  vesicle transport along actin filament  vesicle  actin filament binding  
NDEx NetworkMYO1F
Atlas of Cancer Signalling NetworkMYO1F
Wikipedia pathwaysMYO1F
Orthology - Evolution
OrthoDB4542
GeneTree (enSembl)ENSG00000142347
Phylogenetic Trees/Animal Genes : TreeFamMYO1F
Homologs : HomoloGeneMYO1F
Homology/Alignments : Family Browser (UCSC)MYO1F
Gene fusions - Rearrangements
Fusion : MitelmanZNF414::MYO1F [19p13.2/19p13.2]  
Fusion : QuiverMYO1F
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYO1F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYO1F
dbVarMYO1F
ClinVarMYO1F
MonarchMYO1F
1000_GenomesMYO1F 
Exome Variant ServerMYO1F
GNOMAD BrowserENSG00000142347
Varsome BrowserMYO1F
ACMGMYO1F variants
VarityO00160
Genomic Variants (DGV)MYO1F [DGVbeta]
DECIPHERMYO1F [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMYO1F 
Mutations
ICGC Data PortalMYO1F 
TCGA Data PortalMYO1F 
Broad Tumor PortalMYO1F
OASIS PortalMYO1F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYO1F  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMYO1F
Mutations and Diseases : HGMDMYO1F
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMYO1F
DgiDB (Drug Gene Interaction Database)MYO1F
DoCM (Curated mutations)MYO1F
CIViC (Clinical Interpretations of Variants in Cancer)MYO1F
Cancer3DMYO1F
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601480   
Orphanet
DisGeNETMYO1F
MedgenMYO1F
Genetic Testing Registry MYO1F
NextProtO00160 [Medical]
GENETestsMYO1F
Target ValidationMYO1F
Huge Navigator MYO1F [HugePedia]
ClinGenMYO1F
Clinical trials, drugs, therapy
MyCancerGenomeMYO1F
Protein Interactions : CTDMYO1F
Pharm GKB GenePA31402
PharosO00160
Clinical trialMYO1F
Miscellaneous
canSAR (ICR)MYO1F
HarmonizomeMYO1F
ARCHS4MYO1F
DataMed IndexMYO1F
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMYO1F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:48:22 CET 2022
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