Atlas of Genetics and Cytogenetics in Oncology and Haematology

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MYO1F (myosin IF)

Identity

Other alias-
HGNC (Hugo) MYO1F
LocusID (NCBI) 4542
Atlas_Id 54484
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 8520790 and ends at 8577447 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		C1QC (1p36.12) / MYO1F (19p13.2)KMT2A (11q23.3) / MYO1F (19p13.2)LOC643339 (12q22) / MYO1F (19p13.2)
ZNF335 (20q13.12) / MYO1F (19p13.2)ZNF414 (19p13.2) / MYO1F (19p13.2)KMT2A 11q23.3 / MYO1F 19p13.2
ZNF414 19p13.2 / MYO1F 19p13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MYO1F   7600
Cards
Entrez_Gene (NCBI)MYO1F  4542  myosin IF
Aliases
GeneCards (Weizmann)MYO1F
Ensembl hg19 (Hinxton)ENSG00000142347 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142347 [Gene_View]  chr19:8520790-8577447 [Contig_View]  MYO1F [Vega]
ICGC DataPortalENSG00000142347
TCGA cBioPortalMYO1F
AceView (NCBI)MYO1F
Genatlas (Paris)MYO1F
WikiGenes4542
SOURCE (Princeton)MYO1F
Genetics Home Reference (NIH)MYO1F
Genomic and cartography
GoldenPath hg38 (UCSC)MYO1F  -     chr19:8520790-8577447 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MYO1F  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblMYO1F - 19p13.2 [CytoView hg19]  MYO1F - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIMYO1F [Mapview hg19]  MYO1F [Mapview hg38]
OMIM601480   
Gene and transcription
Genbank (Entrez)AB210037 AB290178 AJ310570 AK131106 AK301166
RefSeq transcript (Entrez)NM_001348355 NM_012335
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MYO1F
Cluster EST : UnigeneHs.465818 [ NCBI ]
CGAP (NCI)Hs.465818
Alternative Splicing GalleryENSG00000142347
Gene ExpressionMYO1F [ NCBI-GEO ]   MYO1F [ EBI - ARRAY_EXPRESS ]   MYO1F [ SEEK ]   MYO1F [ MEM ]
Gene Expression Viewer (FireBrowse)MYO1F [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4542
GTEX Portal (Tissue expression)MYO1F
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00160   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00160  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00160
Splice isoforms : SwissVarO00160
PhosPhoSitePlusO00160
Domaine pattern : Prosite (Expaxy)IQ (PS50096)    MYOSIN_MOTOR (PS51456)    SH3 (PS50002)    TH1 (PS51757)   
Domains : Interpro (EBI)IQ_motif_EF-hand-BS    Myosin_head_motor_dom    Myosin_TH1    P-loop_NTPase    SH3_domain   
Domain families : Pfam (Sanger)Myosin_head (PF00063)    Myosin_TH1 (PF06017)    SH3_9 (PF14604)   
Domain families : Pfam (NCBI)pfam00063    pfam06017    pfam14604   
Domain families : Smart (EMBL)MYSc (SM00242)  SH3 (SM00326)  
Conserved Domain (NCBI)MYO1F
DMDM Disease mutations4542
Blocks (Seattle)MYO1F
SuperfamilyO00160
Human Protein AtlasENSG00000142347
Peptide AtlasO00160
HPRD03282
IPIIPI00218638   IPI00736464   IPI00939886   
Protein Interaction databases
DIP (DOE-UCLA)O00160
IntAct (EBI)O00160
FunCoupENSG00000142347
BioGRIDMYO1F
STRING (EMBL)MYO1F
ZODIACMYO1F
Ontologies - Pathways
QuickGOO00160
Ontology : AmiGOmotor activity  actin binding  calmodulin binding  ATP binding  biological_process  unconventional myosin complex  
Ontology : EGO-EBImotor activity  actin binding  calmodulin binding  ATP binding  biological_process  unconventional myosin complex  
NDEx NetworkMYO1F
Atlas of Cancer Signalling NetworkMYO1F
Wikipedia pathwaysMYO1F
Orthology - Evolution
OrthoDB4542
GeneTree (enSembl)ENSG00000142347
Phylogenetic Trees/Animal Genes : TreeFamMYO1F
HOVERGENO00160
HOGENOMO00160
Homologs : HomoloGeneMYO1F
Homology/Alignments : Family Browser (UCSC)MYO1F
Gene fusions - Rearrangements
Fusion : MitelmanZNF414/MYO1F [19p13.2/19p13.2]  [t(19;19)(p13;p13)]  
Fusion: TCGAZNF414 19p13.2 MYO1F 19p13.2 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYO1F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYO1F
dbVarMYO1F
ClinVarMYO1F
1000_GenomesMYO1F 
Exome Variant ServerMYO1F
ExAC (Exome Aggregation Consortium)MYO1F (select the gene name)
Genetic variants : HAPMAP4542
Genomic Variants (DGV)MYO1F [DGVbeta]
DECIPHERMYO1F [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMYO1F 
Mutations
ICGC Data PortalMYO1F 
TCGA Data PortalMYO1F 
Broad Tumor PortalMYO1F
OASIS PortalMYO1F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYO1F  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMYO1F
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYO1F
DgiDB (Drug Gene Interaction Database)MYO1F
DoCM (Curated mutations)MYO1F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYO1F (select a term)
intoGenMYO1F
Cancer3DMYO1F(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601480   
Orphanet
MedgenMYO1F
Genetic Testing Registry MYO1F
NextProtO00160 [Medical]
TSGene4542
GENETestsMYO1F
Target ValidationMYO1F
Huge Navigator MYO1F [HugePedia]
snp3D : Map Gene to Disease4542
BioCentury BCIQMYO1F
ClinGenMYO1F
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4542
Chemical/Pharm GKB GenePA31402
Clinical trialMYO1F
Miscellaneous
canSAR (ICR)MYO1F (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYO1F
EVEXMYO1F
GoPubMedMYO1F
iHOPMYO1F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:45:51 CEST 2017
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