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MYO5C (myosin VC)

Identity

Alias_symbol (synonym)MGC74969
Other alias-
HGNC (Hugo) MYO5C
LocusID (NCBI) 55930
Atlas_Id 56279
Location 15q21.2  [Link to chromosome band 15q21]
Location_base_pair Starts at 52484515 and ends at 52587995 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MYO5C (15q21.2) / FAM214A (15q21.2)MYO5C (15q21.2) / RBM33 (7q36.3)MYO5C (15q21.2) / SHC4 (15q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYO5C   7604
Cards
Entrez_Gene (NCBI)MYO5C  55930  myosin VC
Aliases
GeneCards (Weizmann)MYO5C
Ensembl hg19 (Hinxton)ENSG00000128833 [Gene_View]  chr15:52484515-52587995 [Contig_View]  MYO5C [Vega]
Ensembl hg38 (Hinxton)ENSG00000128833 [Gene_View]  chr15:52484515-52587995 [Contig_View]  MYO5C [Vega]
ICGC DataPortalENSG00000128833
TCGA cBioPortalMYO5C
AceView (NCBI)MYO5C
Genatlas (Paris)MYO5C
WikiGenes55930
SOURCE (Princeton)MYO5C
Genetics Home Reference (NIH)MYO5C
Genomic and cartography
GoldenPath hg19 (UCSC)MYO5C  -     chr15:52484515-52587995 -  15q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MYO5C  -     15q21.2   [Description]    (hg38-Dec_2013)
EnsemblMYO5C - 15q21.2 [CytoView hg19]  MYO5C - 15q21.2 [CytoView hg38]
Mapping of homologs : NCBIMYO5C [Mapview hg19]  MYO5C [Mapview hg38]
OMIM610022   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_018728
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MYO5C
Cluster EST : UnigeneHs.487036 [ NCBI ]
CGAP (NCI)Hs.487036
Alternative Splicing GalleryENSG00000128833
Gene ExpressionMYO5C [ NCBI-GEO ]   MYO5C [ EBI - ARRAY_EXPRESS ]   MYO5C [ SEEK ]   MYO5C [ MEM ]
Gene Expression Viewer (FireBrowse)MYO5C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55930
GTEX Portal (Tissue expression)MYO5C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQX4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQX4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQX4
Splice isoforms : SwissVarQ9NQX4
PhosPhoSitePlusQ9NQX4
Domaine pattern : Prosite (Expaxy)DILUTE (PS51126)    IQ (PS50096)    MYOSIN_MOTOR (PS51456)   
Domains : Interpro (EBI)Dilute_dom    IQ_motif_EF-hand-BS    Myosin_head_motor_dom    P-loop_NTPase   
Domain families : Pfam (Sanger)DIL (PF01843)    IQ (PF00612)    Myosin_head (PF00063)   
Domain families : Pfam (NCBI)pfam01843    pfam00612    pfam00063   
Domain families : Smart (EMBL)DIL (SM01132)  IQ (SM00015)  MYSc (SM00242)  
Conserved Domain (NCBI)MYO5C
DMDM Disease mutations55930
Blocks (Seattle)MYO5C
PDB (SRS)4L8T    4ZG4   
PDB (PDBSum)4L8T    4ZG4   
PDB (IMB)4L8T    4ZG4   
PDB (RSDB)4L8T    4ZG4   
Structural Biology KnowledgeBase4L8T    4ZG4   
SCOP (Structural Classification of Proteins)4L8T    4ZG4   
CATH (Classification of proteins structures)4L8T    4ZG4   
SuperfamilyQ9NQX4
Human Protein AtlasENSG00000128833
Peptide AtlasQ9NQX4
HPRD11380
IPIIPI00016007   IPI01019088   IPI00908975   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQX4
IntAct (EBI)Q9NQX4
FunCoupENSG00000128833
BioGRIDMYO5C
STRING (EMBL)MYO5C
ZODIACMYO5C
Ontologies - Pathways
QuickGOQ9NQX4
Ontology : AmiGOmotor activity  actin binding  calmodulin binding  ATP binding  myosin complex  extracellular exosome  
Ontology : EGO-EBImotor activity  actin binding  calmodulin binding  ATP binding  myosin complex  extracellular exosome  
NDEx NetworkMYO5C
Atlas of Cancer Signalling NetworkMYO5C
Wikipedia pathwaysMYO5C
Orthology - Evolution
OrthoDB55930
GeneTree (enSembl)ENSG00000128833
Phylogenetic Trees/Animal Genes : TreeFamMYO5C
HOVERGENQ9NQX4
HOGENOMQ9NQX4
Homologs : HomoloGeneMYO5C
Homology/Alignments : Family Browser (UCSC)MYO5C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYO5C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYO5C
dbVarMYO5C
ClinVarMYO5C
1000_GenomesMYO5C 
Exome Variant ServerMYO5C
ExAC (Exome Aggregation Consortium)MYO5C (select the gene name)
Genetic variants : HAPMAP55930
Genomic Variants (DGV)MYO5C [DGVbeta]
DECIPHER (Syndromes)15:52484515-52587995  ENSG00000128833
CONAN: Copy Number AnalysisMYO5C 
Mutations
ICGC Data PortalMYO5C 
TCGA Data PortalMYO5C 
Broad Tumor PortalMYO5C
OASIS PortalMYO5C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYO5C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMYO5C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYO5C
DgiDB (Drug Gene Interaction Database)MYO5C
DoCM (Curated mutations)MYO5C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYO5C (select a term)
intoGenMYO5C
Cancer3DMYO5C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610022   
Orphanet
MedgenMYO5C
Genetic Testing Registry MYO5C
NextProtQ9NQX4 [Medical]
TSGene55930
GENETestsMYO5C
Huge Navigator MYO5C [HugePedia]
snp3D : Map Gene to Disease55930
BioCentury BCIQMYO5C
ClinGenMYO5C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55930
Chemical/Pharm GKB GenePA31409
Clinical trialMYO5C
Miscellaneous
canSAR (ICR)MYO5C (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYO5C
EVEXMYO5C
GoPubMedMYO5C
iHOPMYO5C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:11:29 CEST 2017

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