Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MYOC (myocilin, trabecular meshwork inducible glucocorticoid response)

Identity

Other namesGLC1A
GPOA
JOAG
JOAG1
TIGR
myocilin
HGNC (Hugo) MYOC
LocusID (NCBI) 4653
Location 1q24.3
Location_base_pair Starts at 171604557 and ends at 171621773 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MYOC   7610
Cards
Entrez_Gene (NCBI)MYOC  4653  myocilin, trabecular meshwork inducible glucocorticoid response
GeneCards (Weizmann)MYOC
Ensembl (Hinxton)ENSG00000034971 [Gene_View]  chr1:171604557-171621773 [Contig_View]  MYOC [Vega]
ICGC DataPortalENSG00000034971
cBioPortalMYOC
AceView (NCBI)MYOC
Genatlas (Paris)MYOC
WikiGenes4653
SOURCE (Princeton)NM_000261
Genomic and cartography
GoldenPath (UCSC)MYOC  -  1q24.3   chr1:171604557-171621773 -  1q24.3   [Description]    (hg19-Feb_2009)
EnsemblMYOC - 1q24.3 [CytoView]
Mapping of homologs : NCBIMYOC [Mapview]
OMIM137750   601652   
Gene and transcription
Genbank (Entrez)AF001620 AK097310 AK300924 AK300943 AK301297
RefSeq transcript (Entrez)NM_000261
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_008859 NT_004487 NW_001838533 NW_004929293
Consensus coding sequences : CCDS (NCBI)MYOC
Cluster EST : UnigeneHs.436037 [ NCBI ]
CGAP (NCI)Hs.436037
Alternative Splicing : Fast-db (Paris)GSHG0002736
Alternative Splicing GalleryENSG00000034971
Gene ExpressionMYOC [ NCBI-GEO ]     MYOC [ SEEK ]   MYOC [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99972 (Uniprot)
NextProtQ99972  [Medical]
With graphics : InterProQ99972
Splice isoforms : SwissVarQ99972 (Swissvar)
Domaine pattern : Prosite (Expaxy)OLF (PS51132)   
Domains : Interpro (EBI)Olfac-like [organisation]  
Related proteins : CluSTrQ99972
Domain families : Pfam (Sanger)OLF (PF02191)   
Domain families : Pfam (NCBI)pfam02191   
Domain families : Smart (EMBL)OLF (SM00284)  
DMDM Disease mutations4653
Blocks (Seattle)Q99972
Human Protein AtlasENSG00000034971 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ99972
HPRD03387
IPIIPI00019190   IPI00844385   IPI01015107   IPI01009208   
Protein Interaction databases
DIP (DOE-UCLA)Q99972
IntAct (EBI)Q99972
FunCoupENSG00000034971
BioGRIDMYOC
InParanoidQ99972
Interologous Interaction database Q99972
IntegromeDBMYOC
STRING (EMBL)MYOC
Ontologies - Pathways
Ontology : AmiGOstructural molecule activity  extracellular space  rough endoplasmic reticulum  cilium  anatomical structure morphogenesis  extracellular vesicular exosome  
Ontology : EGO-EBIstructural molecule activity  extracellular space  rough endoplasmic reticulum  cilium  anatomical structure morphogenesis  extracellular vesicular exosome  
Protein Interaction DatabaseMYOC
Wikipedia pathwaysMYOC
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)MYOC
snp3D : Map Gene to Disease4653
SNP (GeneSNP Utah)MYOC
SNP : HGBaseMYOC
Genetic variants : HAPMAPMYOC
Exome VariantMYOC
1000_GenomesMYOC 
ICGC programENSG00000034971 
Somatic Mutations in Cancer : COSMICMYOC 
CONAN: Copy Number AnalysisMYOC 
Mutations and Diseases : HGMDMYOC
Genomic VariantsMYOC  MYOC [DGVbeta]
dbVarMYOC
ClinVarMYOC
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM137750    601652   
MedgenMYOC
GENETestsMYOC
Disease Genetic AssociationMYOC
Huge Navigator MYOC [HugePedia]  MYOC [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneMYOC
Homology/Alignments : Family Browser (UCSC)MYOC
Phylogenetic Trees/Animal Genes : TreeFamMYOC
Chemical/Protein Interactions : CTD4653
Chemical/Pharm GKB GenePA31415
Clinical trialMYOC
Cancer Resource (Charite)ENSG00000034971
Other databases
Probes
Litterature
PubMed200 Pubmed reference(s) in Entrez
CoreMineMYOC
iHOPMYOC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 17:08:02 CEST 2014

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