Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MYOCD (myocardin)

Identity

Alias_symbol (synonym)MYCD
Other alias
HGNC (Hugo) MYOCD
LocusID (NCBI) 93649
Atlas_Id 51392
Location 17p12  [Link to chromosome band 17p12]
Location_base_pair Starts at 12665890 and ends at 12768948 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYOCD   16067
Cards
Entrez_Gene (NCBI)MYOCD  93649  myocardin
AliasesMYCD
GeneCards (Weizmann)MYOCD
Ensembl hg19 (Hinxton)ENSG00000141052 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141052 [Gene_View]  chr17:12665890-12768948 [Contig_View]  MYOCD [Vega]
ICGC DataPortalENSG00000141052
TCGA cBioPortalMYOCD
AceView (NCBI)MYOCD
Genatlas (Paris)MYOCD
WikiGenes93649
SOURCE (Princeton)MYOCD
Genetics Home Reference (NIH)MYOCD
Genomic and cartography
GoldenPath hg38 (UCSC)MYOCD  -     chr17:12665890-12768948 +  17p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MYOCD  -     17p12   [Description]    (hg19-Feb_2009)
EnsemblMYOCD - 17p12 [CytoView hg19]  MYOCD - 17p12 [CytoView hg38]
Mapping of homologs : NCBIMYOCD [Mapview hg19]  MYOCD [Mapview hg38]
OMIM606127   
Gene and transcription
Genbank (Entrez)AF532596 AK095846 AK096753 AK097821 AK128608
RefSeq transcript (Entrez)NM_001146312 NM_001146313 NM_153604
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MYOCD
Cluster EST : UnigeneHs.567641 [ NCBI ]
CGAP (NCI)Hs.567641
Alternative Splicing GalleryENSG00000141052
Gene ExpressionMYOCD [ NCBI-GEO ]   MYOCD [ EBI - ARRAY_EXPRESS ]   MYOCD [ SEEK ]   MYOCD [ MEM ]
Gene Expression Viewer (FireBrowse)MYOCD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93649
GTEX Portal (Tissue expression)MYOCD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZQ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZQ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZQ8
Splice isoforms : SwissVarQ8IZQ8
PhosPhoSitePlusQ8IZQ8
Domaine pattern : Prosite (Expaxy)RPEL (PS51073)    SAP (PS50800)   
Domains : Interpro (EBI)MYOCD    RPEL_repeat    SAP_dom   
Domain families : Pfam (Sanger)RPEL (PF02755)    SAP (PF02037)   
Domain families : Pfam (NCBI)pfam02755    pfam02037   
Domain families : Smart (EMBL)RPEL (SM00707)  SAP (SM00513)  
Conserved Domain (NCBI)MYOCD
DMDM Disease mutations93649
Blocks (Seattle)MYOCD
SuperfamilyQ8IZQ8
Human Protein AtlasENSG00000141052
Peptide AtlasQ8IZQ8
HPRD09362
IPIIPI00218055   IPI00167260   IPI00333359   IPI00742947   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZQ8
IntAct (EBI)Q8IZQ8
FunCoupENSG00000141052
BioGRIDMYOCD
STRING (EMBL)MYOCD
ZODIACMYOCD
Ontologies - Pathways
QuickGOQ8IZQ8
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  nuclear chromatin  core promoter proximal region sequence-specific DNA binding  core promoter sequence-specific DNA binding  transcription factor activity, RNA polymerase II transcription factor binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  RNA polymerase II transcription coactivator activity  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  regulation of cell growth by extracellular stimulus  vasculogenesis  response to hypoxia  cardiac ventricle development  positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation  protein binding  nucleus  transcription from RNA polymerase II promoter  transcription factor binding  positive regulation of cell proliferation  negative regulation of cell proliferation  negative regulation of cardiac muscle cell apoptotic process  negative regulation of myotube differentiation  positive regulation of transforming growth factor beta receptor signaling pathway  histone acetyltransferase binding  cardiocyte differentiation  regulation of histone acetylation  vascular smooth muscle cell differentiation  histone deacetylase binding  positive regulation of DNA binding  cellular component maintenance  regulation of myoblast differentiation  negative regulation of cyclin-dependent protein serine/threonine kinase activity  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  positive regulation of smooth muscle contraction  lung alveolus development  digestive tract development  positive regulation of sequence-specific DNA binding transcription factor activity  smooth muscle cell differentiation  regulation of smooth muscle cell differentiation  positive regulation of smooth muscle cell differentiation  cardiac muscle cell differentiation  ventricular cardiac muscle cell differentiation  uterus development  urinary bladder development  R-SMAD binding  ductus arteriosus closure  negative regulation of beta-amyloid clearance  regulation of phenotypic switching  negative regulation of vascular smooth muscle cell proliferation  negative regulation of vascular associated smooth muscle cell migration  negative regulation of platelet-derived growth factor receptor-beta signaling pathway  positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation  positive regulation of cardiac vascular smooth muscle cell differentiation  positive regulation of cardiac muscle cell differentiation  negative regulation of skeletal muscle cell differentiation  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  nuclear chromatin  core promoter proximal region sequence-specific DNA binding  core promoter sequence-specific DNA binding  transcription factor activity, RNA polymerase II transcription factor binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  RNA polymerase II transcription coactivator activity  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  regulation of cell growth by extracellular stimulus  vasculogenesis  response to hypoxia  cardiac ventricle development  positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation  protein binding  nucleus  transcription from RNA polymerase II promoter  transcription factor binding  positive regulation of cell proliferation  negative regulation of cell proliferation  negative regulation of cardiac muscle cell apoptotic process  negative regulation of myotube differentiation  positive regulation of transforming growth factor beta receptor signaling pathway  histone acetyltransferase binding  cardiocyte differentiation  regulation of histone acetylation  vascular smooth muscle cell differentiation  histone deacetylase binding  positive regulation of DNA binding  cellular component maintenance  regulation of myoblast differentiation  negative regulation of cyclin-dependent protein serine/threonine kinase activity  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  positive regulation of smooth muscle contraction  lung alveolus development  digestive tract development  positive regulation of sequence-specific DNA binding transcription factor activity  smooth muscle cell differentiation  regulation of smooth muscle cell differentiation  positive regulation of smooth muscle cell differentiation  cardiac muscle cell differentiation  ventricular cardiac muscle cell differentiation  uterus development  urinary bladder development  R-SMAD binding  ductus arteriosus closure  negative regulation of beta-amyloid clearance  regulation of phenotypic switching  negative regulation of vascular smooth muscle cell proliferation  negative regulation of vascular associated smooth muscle cell migration  negative regulation of platelet-derived growth factor receptor-beta signaling pathway  positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation  positive regulation of cardiac vascular smooth muscle cell differentiation  positive regulation of cardiac muscle cell differentiation  negative regulation of skeletal muscle cell differentiation  
NDEx NetworkMYOCD
Atlas of Cancer Signalling NetworkMYOCD
Wikipedia pathwaysMYOCD
Orthology - Evolution
OrthoDB93649
GeneTree (enSembl)ENSG00000141052
Phylogenetic Trees/Animal Genes : TreeFamMYOCD
HOVERGENQ8IZQ8
HOGENOMQ8IZQ8
Homologs : HomoloGeneMYOCD
Homology/Alignments : Family Browser (UCSC)MYOCD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYOCD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYOCD
dbVarMYOCD
ClinVarMYOCD
1000_GenomesMYOCD 
Exome Variant ServerMYOCD
ExAC (Exome Aggregation Consortium)MYOCD (select the gene name)
Genetic variants : HAPMAP93649
Genomic Variants (DGV)MYOCD [DGVbeta]
DECIPHERMYOCD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMYOCD 
Mutations
ICGC Data PortalMYOCD 
TCGA Data PortalMYOCD 
Broad Tumor PortalMYOCD
OASIS PortalMYOCD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYOCD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMYOCD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYOCD
DgiDB (Drug Gene Interaction Database)MYOCD
DoCM (Curated mutations)MYOCD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYOCD (select a term)
intoGenMYOCD
Cancer3DMYOCD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606127   
Orphanet
MedgenMYOCD
Genetic Testing Registry MYOCD
NextProtQ8IZQ8 [Medical]
TSGene93649
GENETestsMYOCD
Target ValidationMYOCD
Huge Navigator MYOCD [HugePedia]
snp3D : Map Gene to Disease93649
BioCentury BCIQMYOCD
ClinGenMYOCD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93649
Chemical/Pharm GKB GenePA134946896
Clinical trialMYOCD
Miscellaneous
canSAR (ICR)MYOCD (select the gene name)
Probes
Litterature
PubMed75 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYOCD
EVEXMYOCD
GoPubMedMYOCD
iHOPMYOCD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:21:10 CEST 2017

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