Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MYOG (myogenin (myogenic factor 4))

Identity

Alias_namesMYF4
myogenin (myogenic factor 4)
Alias_symbol (synonym)bHLHc3
Other aliasmyf-4
HGNC (Hugo) MYOG
LocusID (NCBI) 4656
Atlas_Id 47545
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 203052257 and ends at 203055166 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SND1 (7q32.1) / MYOG (1q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYOG   7612
Cards
Entrez_Gene (NCBI)MYOG  4656  myogenin (myogenic factor 4)
AliasesMYF4; bHLHc3; myf-4
GeneCards (Weizmann)MYOG
Ensembl hg19 (Hinxton)ENSG00000122180 [Gene_View]  chr1:203052257-203055166 [Contig_View]  MYOG [Vega]
Ensembl hg38 (Hinxton)ENSG00000122180 [Gene_View]  chr1:203052257-203055166 [Contig_View]  MYOG [Vega]
ICGC DataPortalENSG00000122180
TCGA cBioPortalMYOG
AceView (NCBI)MYOG
Genatlas (Paris)MYOG
WikiGenes4656
SOURCE (Princeton)MYOG
Genetics Home Reference (NIH)MYOG
Genomic and cartography
GoldenPath hg19 (UCSC)MYOG  -     chr1:203052257-203055166 -  1q32.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MYOG  -     1q32.1   [Description]    (hg38-Dec_2013)
EnsemblMYOG - 1q32.1 [CytoView hg19]  MYOG - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIMYOG [Mapview hg19]  MYOG [Mapview hg38]
OMIM159980   
Gene and transcription
Genbank (Entrez)AW469592 BC053899 BF204429 BT007233 EU831793
RefSeq transcript (Entrez)NM_002479
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)MYOG
Cluster EST : UnigeneHs.2830 [ NCBI ]
CGAP (NCI)Hs.2830
Alternative Splicing GalleryENSG00000122180
Gene ExpressionMYOG [ NCBI-GEO ]   MYOG [ EBI - ARRAY_EXPRESS ]   MYOG [ SEEK ]   MYOG [ MEM ]
Gene Expression Viewer (FireBrowse)MYOG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4656
GTEX Portal (Tissue expression)MYOG
Protein : pattern, domain, 3D structure
UniProt/SwissProtP15173   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP15173  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP15173
Splice isoforms : SwissVarP15173
PhosPhoSitePlusP15173
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (EBI)Basic    bHLH_dom   
Domain families : Pfam (Sanger)Basic (PF01586)    HLH (PF00010)   
Domain families : Pfam (NCBI)pfam01586    pfam00010   
Domain families : Smart (EMBL)BASIC (SM00520)  HLH (SM00353)  
Conserved Domain (NCBI)MYOG
DMDM Disease mutations4656
Blocks (Seattle)MYOG
SuperfamilyP15173
Human Protein AtlasENSG00000122180
Peptide AtlasP15173
HPRD01167
IPIIPI00010313   
Protein Interaction databases
DIP (DOE-UCLA)P15173
IntAct (EBI)P15173
FunCoupENSG00000122180
BioGRIDMYOG
STRING (EMBL)MYOG
ZODIACMYOG
Ontologies - Pathways
QuickGOP15173
Ontology : AmiGORNA polymerase II regulatory region sequence-specific DNA binding  RNA polymerase II regulatory region sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding  core promoter binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  ossification  transcription factor activity, sequence-specific DNA binding  transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding  protein binding  nucleus  nucleus  nucleoplasm  transcription factor complex  cell cycle  skeletal muscle tissue development  negative regulation of cell proliferation  response to gravity  positive regulation of myotube differentiation  skeletal muscle atrophy  positive regulation of muscle atrophy  regulation of skeletal muscle satellite cell proliferation  response to muscle activity involved in regulation of muscle adaptation  response to electrical stimulus involved in regulation of muscle adaptation  striated muscle atrophy  response to denervation involved in regulation of muscle adaptation  chromatin DNA binding  protein-DNA complex  skeletal muscle cell differentiation  muscle cell fate commitment  mRNA transcription from RNA polymerase II promoter  skeletal muscle tissue regeneration  sequence-specific DNA binding  myoblast differentiation  positive regulation of myoblast differentiation  positive regulation of myoblast differentiation  negative regulation of glycolytic process  positive regulation of transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  protein heterodimerization activity  skeletal muscle fiber development  positive regulation of skeletal muscle fiber development  positive regulation of skeletal muscle fiber development  positive regulation of muscle cell differentiation  E-box binding  positive regulation of cell cycle arrest  cellular response to magnetism  cellular response to lithium ion  cellular response to retinoic acid  cellular response to growth factor stimulus  cellular response to estradiol stimulus  regulation of myoblast fusion  positive regulation of myoblast fusion  positive regulation of oxidative phosphorylation  
Ontology : EGO-EBIRNA polymerase II regulatory region sequence-specific DNA binding  RNA polymerase II regulatory region sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding  core promoter binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  ossification  transcription factor activity, sequence-specific DNA binding  transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding  protein binding  nucleus  nucleus  nucleoplasm  transcription factor complex  cell cycle  skeletal muscle tissue development  negative regulation of cell proliferation  response to gravity  positive regulation of myotube differentiation  skeletal muscle atrophy  positive regulation of muscle atrophy  regulation of skeletal muscle satellite cell proliferation  response to muscle activity involved in regulation of muscle adaptation  response to electrical stimulus involved in regulation of muscle adaptation  striated muscle atrophy  response to denervation involved in regulation of muscle adaptation  chromatin DNA binding  protein-DNA complex  skeletal muscle cell differentiation  muscle cell fate commitment  mRNA transcription from RNA polymerase II promoter  skeletal muscle tissue regeneration  sequence-specific DNA binding  myoblast differentiation  positive regulation of myoblast differentiation  positive regulation of myoblast differentiation  negative regulation of glycolytic process  positive regulation of transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  protein heterodimerization activity  skeletal muscle fiber development  positive regulation of skeletal muscle fiber development  positive regulation of skeletal muscle fiber development  positive regulation of muscle cell differentiation  E-box binding  positive regulation of cell cycle arrest  cellular response to magnetism  cellular response to lithium ion  cellular response to retinoic acid  cellular response to growth factor stimulus  cellular response to estradiol stimulus  regulation of myoblast fusion  positive regulation of myoblast fusion  positive regulation of oxidative phosphorylation  
NDEx NetworkMYOG
Atlas of Cancer Signalling NetworkMYOG
Wikipedia pathwaysMYOG
Orthology - Evolution
OrthoDB4656
GeneTree (enSembl)ENSG00000122180
Phylogenetic Trees/Animal Genes : TreeFamMYOG
HOVERGENP15173
HOGENOMP15173
Homologs : HomoloGeneMYOG
Homology/Alignments : Family Browser (UCSC)MYOG
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYOG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYOG
dbVarMYOG
ClinVarMYOG
1000_GenomesMYOG 
Exome Variant ServerMYOG
ExAC (Exome Aggregation Consortium)MYOG (select the gene name)
Genetic variants : HAPMAP4656
Genomic Variants (DGV)MYOG [DGVbeta]
DECIPHER (Syndromes)1:203052257-203055166  ENSG00000122180
CONAN: Copy Number AnalysisMYOG 
Mutations
ICGC Data PortalMYOG 
TCGA Data PortalMYOG 
Broad Tumor PortalMYOG
OASIS PortalMYOG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYOG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMYOG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYOG
DgiDB (Drug Gene Interaction Database)MYOG
DoCM (Curated mutations)MYOG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYOG (select a term)
intoGenMYOG
Cancer3DMYOG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM159980   
Orphanet
MedgenMYOG
Genetic Testing Registry MYOG
NextProtP15173 [Medical]
TSGene4656
GENETestsMYOG
Huge Navigator MYOG [HugePedia]
snp3D : Map Gene to Disease4656
BioCentury BCIQMYOG
ClinGenMYOG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4656
Chemical/Pharm GKB GenePA31417
Clinical trialMYOG
Miscellaneous
canSAR (ICR)MYOG (select the gene name)
Probes
Litterature
PubMed59 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYOG
EVEXMYOG
GoPubMedMYOG
iHOPMYOG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:11:30 CEST 2017

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