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MYOM3 (myomesin 3)

Identity

Alias_namesmyomesin family, member 3
Alias_symbol (synonym)FLJ35961
Other alias-
HGNC (Hugo) MYOM3
LocusID (NCBI) 127294
Atlas_Id 70636
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 24056041 and ends at 24112175 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYOM3   26679
Cards
Entrez_Gene (NCBI)MYOM3  127294  myomesin 3
Aliases
GeneCards (Weizmann)MYOM3
Ensembl hg19 (Hinxton)ENSG00000142661 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142661 [Gene_View]  chr1:24056041-24112175 [Contig_View]  MYOM3 [Vega]
ICGC DataPortalENSG00000142661
TCGA cBioPortalMYOM3
AceView (NCBI)MYOM3
Genatlas (Paris)MYOM3
WikiGenes127294
SOURCE (Princeton)MYOM3
Genetics Home Reference (NIH)MYOM3
Genomic and cartography
GoldenPath hg38 (UCSC)MYOM3  -     chr1:24056041-24112175 -  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MYOM3  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblMYOM3 - 1p36.11 [CytoView hg19]  MYOM3 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBIMYOM3 [Mapview hg19]  MYOM3 [Mapview hg38]
OMIM616832   
Gene and transcription
Genbank (Entrez)AF086254 AK093280 AK125972 AK128233 BC014671
RefSeq transcript (Entrez)NM_152372
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MYOM3
Cluster EST : UnigeneHs.523413 [ NCBI ]
CGAP (NCI)Hs.523413
Alternative Splicing GalleryENSG00000142661
Gene ExpressionMYOM3 [ NCBI-GEO ]   MYOM3 [ EBI - ARRAY_EXPRESS ]   MYOM3 [ SEEK ]   MYOM3 [ MEM ]
Gene Expression Viewer (FireBrowse)MYOM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127294
GTEX Portal (Tissue expression)MYOM3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VTT5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VTT5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VTT5
Splice isoforms : SwissVarQ5VTT5
PhosPhoSitePlusQ5VTT5
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)FN3_dom    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    Immunoglobulin   
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)    ig (PF00047)   
Domain families : Pfam (NCBI)pfam00041    pfam07679    pfam00047   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)MYOM3
DMDM Disease mutations127294
Blocks (Seattle)MYOM3
SuperfamilyQ5VTT5
Human Protein AtlasENSG00000142661
Peptide AtlasQ5VTT5
HPRD08200
IPIIPI00395341   IPI00478774   IPI00936836   IPI00396183   IPI00445339   
Protein Interaction databases
DIP (DOE-UCLA)Q5VTT5
IntAct (EBI)Q5VTT5
FunCoupENSG00000142661
BioGRIDMYOM3
STRING (EMBL)MYOM3
ZODIACMYOM3
Ontologies - Pathways
QuickGOQ5VTT5
Ontology : AmiGOmuscle myosin complex  striated muscle contraction  actin filament organization  structural constituent of muscle  Z disc  M band  M band  protein homodimerization activity  sarcomere organization  actin filament binding  muscle alpha-actinin binding  striated muscle myosin thick filament assembly  structural molecule activity conferring elasticity  
Ontology : EGO-EBImuscle myosin complex  striated muscle contraction  actin filament organization  structural constituent of muscle  Z disc  M band  M band  protein homodimerization activity  sarcomere organization  actin filament binding  muscle alpha-actinin binding  striated muscle myosin thick filament assembly  structural molecule activity conferring elasticity  
NDEx NetworkMYOM3
Atlas of Cancer Signalling NetworkMYOM3
Wikipedia pathwaysMYOM3
Orthology - Evolution
OrthoDB127294
GeneTree (enSembl)ENSG00000142661
Phylogenetic Trees/Animal Genes : TreeFamMYOM3
HOVERGENQ5VTT5
HOGENOMQ5VTT5
Homologs : HomoloGeneMYOM3
Homology/Alignments : Family Browser (UCSC)MYOM3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYOM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYOM3
dbVarMYOM3
ClinVarMYOM3
1000_GenomesMYOM3 
Exome Variant ServerMYOM3
ExAC (Exome Aggregation Consortium)MYOM3 (select the gene name)
Genetic variants : HAPMAP127294
Genomic Variants (DGV)MYOM3 [DGVbeta]
DECIPHERMYOM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMYOM3 
Mutations
ICGC Data PortalMYOM3 
TCGA Data PortalMYOM3 
Broad Tumor PortalMYOM3
OASIS PortalMYOM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYOM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMYOM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYOM3
DgiDB (Drug Gene Interaction Database)MYOM3
DoCM (Curated mutations)MYOM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYOM3 (select a term)
intoGenMYOM3
Cancer3DMYOM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616832   
Orphanet
MedgenMYOM3
Genetic Testing Registry MYOM3
NextProtQ5VTT5 [Medical]
TSGene127294
GENETestsMYOM3
Huge Navigator MYOM3 [HugePedia]
snp3D : Map Gene to Disease127294
BioCentury BCIQMYOM3
ClinGenMYOM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127294
Chemical/Pharm GKB GenePA134899390
Clinical trialMYOM3
Miscellaneous
canSAR (ICR)MYOM3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYOM3
EVEXMYOM3
GoPubMedMYOM3
iHOPMYOM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:44:24 CEST 2017

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