Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA
Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

Donate (in Euros)

Donate (in US Dollars)


MYOZ2 (myozenin 2)

Identity

Other namesC4orf5
CMH16
CS-1
HGNC (Hugo) MYOZ2
LocusID (NCBI) 51778
Location 4q26
Location_base_pair Starts at 120056939 and ends at 120108944 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MYOZ2   1330
Cards
Entrez_Gene (NCBI)MYOZ2  51778  myozenin 2
GeneCards (Weizmann)MYOZ2
Ensembl hg19 (Hinxton)ENSG00000172399 [Gene_View]  chr4:120056939-120108944 [Contig_View]  MYOZ2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172399 [Gene_View]  chr4:120056939-120108944 [Contig_View]  MYOZ2 [Vega]
ICGC DataPortalENSG00000172399
cBioPortalMYOZ2
AceView (NCBI)MYOZ2
Genatlas (Paris)MYOZ2
WikiGenes51778
SOURCE (Princeton)MYOZ2
Genomic and cartography
GoldenPath hg19 (UCSC)MYOZ2  -     chr4:120056939-120108944 +  4q26   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MYOZ2  -     4q26   [Description]    (hg38-Dec_2013)
EnsemblMYOZ2 - 4q26 [CytoView hg19]  MYOZ2 - 4q26 [CytoView hg38]
Mapping of homologs : NCBIMYOZ2 [Mapview hg19]  MYOZ2 [Mapview hg38]
OMIM605602   613838   
Gene and transcription
Genbank (Entrez)AF007160 AF249873 AJ252149 AK313856 AY013295
RefSeq transcript (Entrez)NM_016599
RefSeq genomic (Entrez)NC_000004 NC_018915 NG_029747 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)MYOZ2
Cluster EST : UnigeneHs.732122 [ NCBI ]
CGAP (NCI)Hs.732122
Alternative Splicing : Fast-db (Paris)GSHG0022809
Alternative Splicing GalleryENSG00000172399
Gene ExpressionMYOZ2 [ NCBI-GEO ]     MYOZ2 [ SEEK ]   MYOZ2 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPC6 (Uniprot)
NextProtQ9NPC6  [Medical]
With graphics : InterProQ9NPC6
Splice isoforms : SwissVarQ9NPC6 (Swissvar)
Domains : Interpro (EBI)MYOZ   
Related proteins : CluSTrQ9NPC6
Domain families : Pfam (Sanger)Calsarcin (PF05556)   
Domain families : Pfam (NCBI)pfam05556   
DMDM Disease mutations51778
Blocks (Seattle)Q9NPC6
Human Protein AtlasENSG00000172399
Peptide AtlasQ9NPC6
HPRD05724
IPIIPI00387020   IPI00981841   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPC6
IntAct (EBI)Q9NPC6
FunCoupENSG00000172399
BioGRIDMYOZ2
IntegromeDBMYOZ2
STRING (EMBL)MYOZ2
Ontologies - Pathways
QuickGOQ9NPC6
Ontology : AmiGOactin binding  protein binding  biological_process  actin cytoskeleton  sarcomere  Z disc  protein phosphatase 2B binding  telethonin binding  
Ontology : EGO-EBIactin binding  protein binding  biological_process  actin cytoskeleton  sarcomere  Z disc  protein phosphatase 2B binding  telethonin binding  
Protein Interaction DatabaseMYOZ2
DoCM (Curated mutations)MYOZ2
Wikipedia pathwaysMYOZ2
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerMYOZ2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYOZ2
dbVarMYOZ2
ClinVarMYOZ2
1000_GenomesMYOZ2 
Exome Variant ServerMYOZ2
SNP (GeneSNP Utah)MYOZ2
SNP : HGBaseMYOZ2
Genetic variants : HAPMAPMYOZ2
Genomic Variants (DGV)MYOZ2 [DGVbeta]
Mutations
ICGC Data PortalENSG00000172399 
Somatic Mutations in Cancer : COSMICMYOZ2 
CONAN: Copy Number AnalysisMYOZ2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)4:120056939-120108944
Mutations and Diseases : HGMDMYOZ2
OMIM605602    613838   
MedgenMYOZ2
NextProtQ9NPC6 [Medical]
GENETestsMYOZ2
Disease Genetic AssociationMYOZ2
Huge Navigator MYOZ2 [HugePedia]  MYOZ2 [HugeCancerGEM]
snp3D : Map Gene to Disease51778
DGIdb (Drug Gene Interaction db)MYOZ2
General knowledge
Homologs : HomoloGeneMYOZ2
Homology/Alignments : Family Browser (UCSC)MYOZ2
Phylogenetic Trees/Animal Genes : TreeFamMYOZ2
Chemical/Protein Interactions : CTD51778
Chemical/Pharm GKB GenePA31421
Clinical trialMYOZ2
Cancer Resource (Charite)ENSG00000172399
Other databases
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
CoreMineMYOZ2
GoPubMedMYOZ2
iHOPMYOZ2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 16:37:40 CET 2015

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.