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MYPN (myopalladin)

Identity

Other namesCMD1DD
CMH22
MYOP
RCM4
HGNC (Hugo) MYPN
LocusID (NCBI) 84665
Location 10q21.3
Location_base_pair Starts at 69865874 and ends at 69971773 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MYPN   23246
Cards
Entrez_Gene (NCBI)MYPN  84665  myopalladin
GeneCards (Weizmann)MYPN
Ensembl hg19 (Hinxton)ENSG00000138347 [Gene_View]  chr10:69865874-69971773 [Contig_View]  MYPN [Vega]
Ensembl hg38 (Hinxton)ENSG00000138347 [Gene_View]  chr10:69865874-69971773 [Contig_View]  MYPN [Vega]
ICGC DataPortalENSG00000138347
cBioPortalMYPN
AceView (NCBI)MYPN
Genatlas (Paris)MYPN
WikiGenes84665
SOURCE (Princeton)MYPN
Genomic and cartography
GoldenPath hg19 (UCSC)MYPN  -     chr10:69865874-69971773 +  10q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MYPN  -     10q21.3   [Description]    (hg38-Dec_2013)
EnsemblMYPN - 10q21.3 [CytoView hg19]  MYPN - 10q21.3 [CytoView hg38]
Mapping of homologs : NCBIMYPN [Mapview hg19]  MYPN [Mapview hg38]
OMIM608517   615248   
Gene and transcription
Genbank (Entrez)AF328296 AK027343 AL832002 AL832379 AL834247
RefSeq transcript (Entrez)NM_001256267 NM_001256268 NM_032578
RefSeq genomic (Entrez)AC_000142 NC_000010 NC_018921 NG_032118 NT_030059 NW_001837986 NW_004929376
Consensus coding sequences : CCDS (NCBI)MYPN
Cluster EST : UnigeneHs.55205 [ NCBI ]
CGAP (NCI)Hs.55205
Alternative Splicing : Fast-db (Paris)GSHG0003407
Alternative Splicing GalleryENSG00000138347
Gene ExpressionMYPN [ NCBI-GEO ]     MYPN [ SEEK ]   MYPN [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86TC9 (Uniprot)
NextProtQ86TC9  [Medical]
With graphics : InterProQ86TC9
Splice isoforms : SwissVarQ86TC9 (Swissvar)
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub2   
Related proteins : CluSTrQ86TC9
Domain families : Pfam (Sanger)I-set (PF07679)   
Domain families : Pfam (NCBI)pfam07679   
Domain families : Smart (EMBL)IGc2 (SM00408)  
DMDM Disease mutations84665
Blocks (Seattle)Q86TC9
Human Protein AtlasENSG00000138347
Peptide AtlasQ86TC9
HPRD10536
IPIIPI00645179   IPI00477680   IPI00871200   
Protein Interaction databases
DIP (DOE-UCLA)Q86TC9
IntAct (EBI)Q86TC9
FunCoupENSG00000138347
BioGRIDMYPN
IntegromeDBMYPN
STRING (EMBL)MYPN
Ontologies - Pathways
QuickGOQ86TC9
Ontology : AmiGOactin binding  protein binding  nucleus  cytoskeletal protein binding  SH3 domain binding  Z disc  I band  sarcomere organization  muscle alpha-actinin binding  
Ontology : EGO-EBIactin binding  protein binding  nucleus  cytoskeletal protein binding  SH3 domain binding  Z disc  I band  sarcomere organization  muscle alpha-actinin binding  
Protein Interaction DatabaseMYPN
DoCM (Curated mutations)MYPN
Wikipedia pathwaysMYPN
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerMYPN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYPN
dbVarMYPN
ClinVarMYPN
1000_GenomesMYPN 
Exome Variant ServerMYPN
SNP (GeneSNP Utah)MYPN
SNP : HGBaseMYPN
Genetic variants : HAPMAPMYPN
Genomic VariantsMYPN  MYPN [DGVbeta]
Mutations
ICGC Data PortalENSG00000138347 
Somatic Mutations in Cancer : COSMICMYPN 
CONAN: Copy Number AnalysisMYPN 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)10:69865874-69971773
Mutations and Diseases : HGMDMYPN
OMIM608517    615248   
MedgenMYPN
NextProtQ86TC9 [Medical]
GENETestsMYPN
Disease Genetic AssociationMYPN
Huge Navigator MYPN [HugePedia]  MYPN [HugeCancerGEM]
snp3D : Map Gene to Disease84665
DGIdb (Drug Gene Interaction db)MYPN
General knowledge
Homologs : HomoloGeneMYPN
Homology/Alignments : Family Browser (UCSC)MYPN
Phylogenetic Trees/Animal Genes : TreeFamMYPN
Chemical/Protein Interactions : CTD84665
Chemical/Pharm GKB GenePA134944534
Clinical trialMYPN
Cancer Resource (Charite)ENSG00000138347
Other databases
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
CoreMineMYPN
GoPubMedMYPN
iHOPMYPN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 00:22:49 CET 2014

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