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MYPOP (Myb related transcription factor, partner of profilin)

Identity

Alias_symbol (synonym)P42pop
Other alias
HGNC (Hugo) MYPOP
LocusID (NCBI) 339344
Atlas_Id 70638
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 45890023 and ends at 45902604 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MYPOP (19q13.32) / NOL4L20q11.21 ()MYPOP (19q13.32) / RAI1 (17p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYPOP   20178
Cards
Entrez_Gene (NCBI)MYPOP  339344  Myb related transcription factor, partner of profilin
AliasesP42pop
GeneCards (Weizmann)MYPOP
Ensembl hg19 (Hinxton)ENSG00000176182 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176182 [Gene_View]  chr19:45890023-45902604 [Contig_View]  MYPOP [Vega]
ICGC DataPortalENSG00000176182
TCGA cBioPortalMYPOP
AceView (NCBI)MYPOP
Genatlas (Paris)MYPOP
WikiGenes339344
SOURCE (Princeton)MYPOP
Genetics Home Reference (NIH)MYPOP
Genomic and cartography
GoldenPath hg38 (UCSC)MYPOP  -     chr19:45890023-45902604 -  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MYPOP  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblMYPOP - 19q13.32 [CytoView hg19]  MYPOP - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBIMYPOP [Mapview hg19]  MYPOP [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC044311 BU196283
RefSeq transcript (Entrez)NM_001012643
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MYPOP
Cluster EST : UnigeneHs.515478 [ NCBI ]
CGAP (NCI)Hs.515478
Alternative Splicing GalleryENSG00000176182
Gene ExpressionMYPOP [ NCBI-GEO ]   MYPOP [ EBI - ARRAY_EXPRESS ]   MYPOP [ SEEK ]   MYPOP [ MEM ]
Gene Expression Viewer (FireBrowse)MYPOP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339344
GTEX Portal (Tissue expression)MYPOP
Human Protein AtlasENSG00000176182-MYPOP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VE0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VE0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VE0
Splice isoforms : SwissVarQ86VE0
PhosPhoSitePlusQ86VE0
Domaine pattern : Prosite (Expaxy)MYB_LIKE (PS50090)   
Domains : Interpro (EBI)Homeobox-like    Myb-like_dom    Myb_DNA-bind_5    SANT/Myb   
Domain families : Pfam (Sanger)Myb_DNA-bind_5 (PF13873)   
Domain families : Pfam (NCBI)pfam13873   
Domain families : Smart (EMBL)SANT (SM00717)  
Conserved Domain (NCBI)MYPOP
DMDM Disease mutations339344
Blocks (Seattle)MYPOP
SuperfamilyQ86VE0
Human Protein Atlas [tissue]ENSG00000176182-MYPOP [tissue]
Peptide AtlasQ86VE0
HPRD17352
IPIIPI00328876   
Protein Interaction databases
DIP (DOE-UCLA)Q86VE0
IntAct (EBI)Q86VE0
FunCoupENSG00000176182
BioGRIDMYPOP
STRING (EMBL)MYPOP
ZODIACMYPOP
Ontologies - Pathways
QuickGOQ86VE0
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  nucleus  transcription, DNA-templated  protein homodimerization activity  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  nucleus  transcription, DNA-templated  protein homodimerization activity  
NDEx NetworkMYPOP
Atlas of Cancer Signalling NetworkMYPOP
Wikipedia pathwaysMYPOP
Orthology - Evolution
OrthoDB339344
GeneTree (enSembl)ENSG00000176182
Phylogenetic Trees/Animal Genes : TreeFamMYPOP
HOVERGENQ86VE0
HOGENOMQ86VE0
Homologs : HomoloGeneMYPOP
Homology/Alignments : Family Browser (UCSC)MYPOP
Gene fusions - Rearrangements
Fusion: Tumor Portal MYPOP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYPOP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYPOP
dbVarMYPOP
ClinVarMYPOP
1000_GenomesMYPOP 
Exome Variant ServerMYPOP
ExAC (Exome Aggregation Consortium)ENSG00000176182
GNOMAD BrowserENSG00000176182
Genetic variants : HAPMAP339344
Genomic Variants (DGV)MYPOP [DGVbeta]
DECIPHERMYPOP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMYPOP 
Mutations
ICGC Data PortalMYPOP 
TCGA Data PortalMYPOP 
Broad Tumor PortalMYPOP
OASIS PortalMYPOP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYPOP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMYPOP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYPOP
DgiDB (Drug Gene Interaction Database)MYPOP
DoCM (Curated mutations)MYPOP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYPOP (select a term)
intoGenMYPOP
Cancer3DMYPOP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMYPOP
Genetic Testing Registry MYPOP
NextProtQ86VE0 [Medical]
TSGene339344
GENETestsMYPOP
Target ValidationMYPOP
Huge Navigator MYPOP [HugePedia]
snp3D : Map Gene to Disease339344
BioCentury BCIQMYPOP
ClinGenMYPOP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339344
Chemical/Pharm GKB GenePA164723403
Clinical trialMYPOP
Miscellaneous
canSAR (ICR)MYPOP (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYPOP
EVEXMYPOP
GoPubMedMYPOP
iHOPMYPOP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:18:25 CET 2017

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