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MYRIP (myosin VIIA and Rab interacting protein)

Identity

Alias_symbol (synonym)DKFZp586F1018
exophilin-8
MyRIP
SLAC2-C
SLAC2C
Other alias
HGNC (Hugo) MYRIP
LocusID (NCBI) 25924
Atlas_Id 70641
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 39808914 and ends at 40260320 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PFKFB4 (3p21.31) / MYRIP (3p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYRIP   19156
Cards
Entrez_Gene (NCBI)MYRIP  25924  myosin VIIA and Rab interacting protein
AliasesSLAC2-C; SLAC2C
GeneCards (Weizmann)MYRIP
Ensembl hg19 (Hinxton)ENSG00000170011 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170011 [Gene_View]  chr3:39808914-40260320 [Contig_View]  MYRIP [Vega]
ICGC DataPortalENSG00000170011
TCGA cBioPortalMYRIP
AceView (NCBI)MYRIP
Genatlas (Paris)MYRIP
WikiGenes25924
SOURCE (Princeton)MYRIP
Genetics Home Reference (NIH)MYRIP
Genomic and cartography
GoldenPath hg38 (UCSC)MYRIP  -     chr3:39808914-40260320 +  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MYRIP  -     3p22.1   [Description]    (hg19-Feb_2009)
EnsemblMYRIP - 3p22.1 [CytoView hg19]  MYRIP - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBIMYRIP [Mapview hg19]  MYRIP [Mapview hg38]
OMIM611790   
Gene and transcription
Genbank (Entrez)AB083783 AF396687 AK125334 AK126013 AK294714
RefSeq transcript (Entrez)NM_001284423 NM_001284424 NM_001284425 NM_001284426 NM_015460
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MYRIP
Cluster EST : UnigeneHs.594535 [ NCBI ]
CGAP (NCI)Hs.594535
Alternative Splicing GalleryENSG00000170011
Gene ExpressionMYRIP [ NCBI-GEO ]   MYRIP [ EBI - ARRAY_EXPRESS ]   MYRIP [ SEEK ]   MYRIP [ MEM ]
Gene Expression Viewer (FireBrowse)MYRIP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25924
GTEX Portal (Tissue expression)MYRIP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFW9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NFW9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NFW9
Splice isoforms : SwissVarQ8NFW9
PhosPhoSitePlusQ8NFW9
Domaine pattern : Prosite (Expaxy)RABBD (PS50916)   
Domains : Interpro (EBI)Myrip/Melanophilin    Rab_BD    Znf_FYVE_PHD    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)FYVE_2 (PF02318)    Rab_eff_C (PF04698)   
Domain families : Pfam (NCBI)pfam02318    pfam04698   
Conserved Domain (NCBI)MYRIP
DMDM Disease mutations25924
Blocks (Seattle)MYRIP
SuperfamilyQ8NFW9
Human Protein AtlasENSG00000170011
Peptide AtlasQ8NFW9
HPRD14796
IPIIPI00292570   IPI01013026   IPI00743642   IPI00922578   IPI00926230   IPI00926484   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFW9
IntAct (EBI)Q8NFW9
FunCoupENSG00000170011
BioGRIDMYRIP
STRING (EMBL)MYRIP
ZODIACMYRIP
Ontologies - Pathways
QuickGOQ8NFW9
Ontology : AmiGOexocyst  photoreceptor outer segment  actin binding  protein binding  intracellular protein transport  zinc ion binding  actin cytoskeleton  myosin binding  Rab GTPase binding  transport vesicle  dense core granule  positive regulation of insulin secretion  melanosome  synapse  perinuclear region of cytoplasm  protein kinase A binding  
Ontology : EGO-EBIexocyst  photoreceptor outer segment  actin binding  protein binding  intracellular protein transport  zinc ion binding  actin cytoskeleton  myosin binding  Rab GTPase binding  transport vesicle  dense core granule  positive regulation of insulin secretion  melanosome  synapse  perinuclear region of cytoplasm  protein kinase A binding  
NDEx NetworkMYRIP
Atlas of Cancer Signalling NetworkMYRIP
Wikipedia pathwaysMYRIP
Orthology - Evolution
OrthoDB25924
GeneTree (enSembl)ENSG00000170011
Phylogenetic Trees/Animal Genes : TreeFamMYRIP
HOVERGENQ8NFW9
HOGENOMQ8NFW9
Homologs : HomoloGeneMYRIP
Homology/Alignments : Family Browser (UCSC)MYRIP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYRIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYRIP
dbVarMYRIP
ClinVarMYRIP
1000_GenomesMYRIP 
Exome Variant ServerMYRIP
ExAC (Exome Aggregation Consortium)MYRIP (select the gene name)
Genetic variants : HAPMAP25924
Genomic Variants (DGV)MYRIP [DGVbeta]
DECIPHERMYRIP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMYRIP 
Mutations
ICGC Data PortalMYRIP 
TCGA Data PortalMYRIP 
Broad Tumor PortalMYRIP
OASIS PortalMYRIP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYRIP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMYRIP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYRIP
DgiDB (Drug Gene Interaction Database)MYRIP
DoCM (Curated mutations)MYRIP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYRIP (select a term)
intoGenMYRIP
Cancer3DMYRIP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611790   
Orphanet
MedgenMYRIP
Genetic Testing Registry MYRIP
NextProtQ8NFW9 [Medical]
TSGene25924
GENETestsMYRIP
Target ValidationMYRIP
Huge Navigator MYRIP [HugePedia]
snp3D : Map Gene to Disease25924
BioCentury BCIQMYRIP
ClinGenMYRIP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25924
Chemical/Pharm GKB GenePA38800
Clinical trialMYRIP
Miscellaneous
canSAR (ICR)MYRIP (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYRIP
EVEXMYRIP
GoPubMedMYRIP
iHOPMYRIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:32:07 CEST 2017

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