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MYT1 (myelin transcription factor 1)

Identity

Alias_namesPLPB1
Alias_symbol (synonym)MTF1
MYTI
ZC2HC4A
NZF2
ZC2H2C1
Other aliasC20orf36
HGNC (Hugo) MYT1
LocusID (NCBI) 4661
Atlas_Id 50898
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 64164474 and ends at 64242253 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
STX16 (20q13.32) / MYT1 (20q13.33)STX16 20q13.32 / MYT1 20q13.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYT1   7622
Cards
Entrez_Gene (NCBI)MYT1  4661  myelin transcription factor 1
AliasesC20orf36; MTF1; MYTI; NZF2; 
PLPB1; ZC2H2C1; ZC2HC4A
GeneCards (Weizmann)MYT1
Ensembl hg19 (Hinxton)ENSG00000196132 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196132 [Gene_View]  chr20:64164474-64242253 [Contig_View]  MYT1 [Vega]
ICGC DataPortalENSG00000196132
TCGA cBioPortalMYT1
AceView (NCBI)MYT1
Genatlas (Paris)MYT1
WikiGenes4661
SOURCE (Princeton)MYT1
Genetics Home Reference (NIH)MYT1
Genomic and cartography
GoldenPath hg38 (UCSC)MYT1  -     chr20:64164474-64242253 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MYT1  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblMYT1 - 20q13.33 [CytoView hg19]  MYT1 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIMYT1 [Mapview hg19]  MYT1 [Mapview hg38]
OMIM600379   
Gene and transcription
Genbank (Entrez)AB020642 BC018917 BC053638 BC062313 M96980
RefSeq transcript (Entrez)NM_004535
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_187624
Consensus coding sequences : CCDS (NCBI)MYT1
Cluster EST : UnigeneHs.279562 [ NCBI ]
CGAP (NCI)Hs.279562
Alternative Splicing GalleryENSG00000196132
Gene ExpressionMYT1 [ NCBI-GEO ]   MYT1 [ EBI - ARRAY_EXPRESS ]   MYT1 [ SEEK ]   MYT1 [ MEM ]
Gene Expression Viewer (FireBrowse)MYT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4661
GTEX Portal (Tissue expression)MYT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ01538   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ01538  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ01538
Splice isoforms : SwissVarQ01538
PhosPhoSitePlusQ01538
Domaine pattern : Prosite (Expaxy)ZF_CCHHC (PS51802)   
Domains : Interpro (EBI)Myelin_TF    Znf_C2HC   
Domain families : Pfam (Sanger)MYT1 (PF08474)    zf-C2HC (PF01530)   
Domain families : Pfam (NCBI)pfam08474    pfam01530   
Conserved Domain (NCBI)MYT1
DMDM Disease mutations4661
Blocks (Seattle)MYT1
SuperfamilyQ01538
Human Protein AtlasENSG00000196132
Peptide AtlasQ01538
HPRD02659
IPIIPI00008332   IPI01012044   IPI00441201   
Protein Interaction databases
DIP (DOE-UCLA)Q01538
IntAct (EBI)Q01538
FunCoupENSG00000196132
BioGRIDMYT1
STRING (EMBL)MYT1
ZODIACMYT1
Ontologies - Pathways
QuickGOQ01538
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  nervous system development  zinc ion binding  cell differentiation  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  nervous system development  zinc ion binding  cell differentiation  
Pathways : BIOCARTAcdc25 and chk1 Regulatory Pathway in response to DNA damage [Genes]    Cell Cycle: G2/M Checkpoint [Genes]    RB Tumor Suppressor/Checkpoint Signaling in response to DNA damage [Genes]    How Progesterone Initiates the Oocyte Maturation [Genes]   
NDEx NetworkMYT1
Atlas of Cancer Signalling NetworkMYT1
Wikipedia pathwaysMYT1
Orthology - Evolution
OrthoDB4661
GeneTree (enSembl)ENSG00000196132
Phylogenetic Trees/Animal Genes : TreeFamMYT1
HOVERGENQ01538
HOGENOMQ01538
Homologs : HomoloGeneMYT1
Homology/Alignments : Family Browser (UCSC)MYT1
Gene fusions - Rearrangements
Fusion : MitelmanSTX16/MYT1 [20q13.32/20q13.33]  [t(20;20)(q13;q13)]  
Fusion: TCGASTX16 20q13.32 MYT1 20q13.33 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYT1
dbVarMYT1
ClinVarMYT1
1000_GenomesMYT1 
Exome Variant ServerMYT1
ExAC (Exome Aggregation Consortium)MYT1 (select the gene name)
Genetic variants : HAPMAP4661
Genomic Variants (DGV)MYT1 [DGVbeta]
DECIPHERMYT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMYT1 
Mutations
ICGC Data PortalMYT1 
TCGA Data PortalMYT1 
Broad Tumor PortalMYT1
OASIS PortalMYT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMYT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYT1
DgiDB (Drug Gene Interaction Database)MYT1
DoCM (Curated mutations)MYT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYT1 (select a term)
intoGenMYT1
Cancer3DMYT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600379   
Orphanet
MedgenMYT1
Genetic Testing Registry MYT1
NextProtQ01538 [Medical]
TSGene4661
GENETestsMYT1
Target ValidationMYT1
Huge Navigator MYT1 [HugePedia]
snp3D : Map Gene to Disease4661
BioCentury BCIQMYT1
ClinGenMYT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4661
Chemical/Pharm GKB GenePA31426
Clinical trialMYT1
Miscellaneous
canSAR (ICR)MYT1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYT1
EVEXMYT1
GoPubMedMYT1
iHOPMYT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:01:03 CEST 2017

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