Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

N4BP2L1 (NEDD4 binding protein 2 like 1)

Identity

Alias (NCBI)CG018
HGNC (Hugo) N4BP2L1
HGNC Alias symbCG018
HGNC Alias namehypothetical gene CG018
LocusID (NCBI) 90634
Atlas_Id 70650
Location 13q13.1  [Link to chromosome band 13q13]
Location_base_pair Starts at 32400723 and ends at 32428178 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
N4BP2L1 (13q13.1) / N4BP2L1 (13q13.1)N4BP2L1 (13q13.1) / ZBTB18 (1q44)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)N4BP2L1   25037
Cards
Entrez_Gene (NCBI)N4BP2L1    NEDD4 binding protein 2 like 1
AliasesCG018
GeneCards (Weizmann)N4BP2L1
Ensembl hg19 (Hinxton)ENSG00000139597 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139597 [Gene_View]  ENSG00000139597 [Sequence]  chr13:32400723-32428178 [Contig_View]  N4BP2L1 [Vega]
ICGC DataPortalENSG00000139597
TCGA cBioPortalN4BP2L1
AceView (NCBI)N4BP2L1
Genatlas (Paris)N4BP2L1
SOURCE (Princeton)N4BP2L1
Genetics Home Reference (NIH)N4BP2L1
Genomic and cartography
GoldenPath hg38 (UCSC)N4BP2L1  -     chr13:32400723-32428178 -  13q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)N4BP2L1  -     13q13.1   [Description]    (hg19-Feb_2009)
GoldenPathN4BP2L1 - 13q13.1 [CytoView hg19]  N4BP2L1 - 13q13.1 [CytoView hg38]
ImmunoBaseENSG00000139597
genome Data Viewer NCBIN4BP2L1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI783635 AI916535 AL049785 AL049786 AL049787
RefSeq transcript (Entrez)NM_001079691 NM_001286459 NM_001286460 NM_001286461 NM_001353627 NM_001353628 NM_001353629 NM_001353630 NM_001353631 NM_001353632 NM_001353633 NM_001353634 NM_001353635 NM_001353636 NM_001353637 NM_052818
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)N4BP2L1
Alternative Splicing GalleryENSG00000139597
Gene ExpressionN4BP2L1 [ NCBI-GEO ]   N4BP2L1 [ EBI - ARRAY_EXPRESS ]   N4BP2L1 [ SEEK ]   N4BP2L1 [ MEM ]
Gene Expression Viewer (FireBrowse)N4BP2L1 [ Firebrowse - Broad ]
GenevisibleExpression of N4BP2L1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90634
GTEX Portal (Tissue expression)N4BP2L1
Human Protein AtlasENSG00000139597-N4BP2L1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TBK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TBK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TBK1
Splice isoforms : SwissVarQ5TBK1
PhosPhoSitePlusQ5TBK1
Domains : Interpro (EBI)NEDD4_b_p2    P-loop_NTPase   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)N4BP2L1
Blocks (Seattle)N4BP2L1
SuperfamilyQ5TBK1
Human Protein Atlas [tissue]ENSG00000139597-N4BP2L1 [tissue]
Peptide AtlasQ5TBK1
HPRD12384
IPIIPI00163804   IPI00102831   IPI01012776   IPI00513854   
Protein Interaction databases
DIP (DOE-UCLA)Q5TBK1
IntAct (EBI)Q5TBK1
BioGRIDN4BP2L1
STRING (EMBL)N4BP2L1
ZODIACN4BP2L1
Ontologies - Pathways
QuickGOQ5TBK1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkN4BP2L1
Atlas of Cancer Signalling NetworkN4BP2L1
Wikipedia pathwaysN4BP2L1
Orthology - Evolution
OrthoDB90634
GeneTree (enSembl)ENSG00000139597
Phylogenetic Trees/Animal Genes : TreeFamN4BP2L1
HOGENOMQ5TBK1
Homologs : HomoloGeneN4BP2L1
Homology/Alignments : Family Browser (UCSC)N4BP2L1
Gene fusions - Rearrangements
Fusion : QuiverN4BP2L1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerN4BP2L1 [hg38]
dbVarN4BP2L1
ClinVarN4BP2L1
MonarchN4BP2L1
1000_GenomesN4BP2L1 
Exome Variant ServerN4BP2L1
GNOMAD BrowserENSG00000139597
Varsome BrowserN4BP2L1
Genomic Variants (DGV)N4BP2L1 [DGVbeta]
DECIPHERN4BP2L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisN4BP2L1 
Mutations
ICGC Data PortalN4BP2L1 
TCGA Data PortalN4BP2L1 
Broad Tumor PortalN4BP2L1
OASIS PortalN4BP2L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICN4BP2L1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DN4BP2L1
Mutations and Diseases : HGMDN4BP2L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch N4BP2L1
DgiDB (Drug Gene Interaction Database)N4BP2L1
DoCM (Curated mutations)N4BP2L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)N4BP2L1 (select a term)
intoGenN4BP2L1
Cancer3DN4BP2L1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETN4BP2L1
MedgenN4BP2L1
Genetic Testing Registry N4BP2L1
NextProtQ5TBK1 [Medical]
GENETestsN4BP2L1
Target ValidationN4BP2L1
Huge Navigator N4BP2L1 [HugePedia]
ClinGenN4BP2L1
Clinical trials, drugs, therapy
MyCancerGenomeN4BP2L1
Protein Interactions : CTD
Pharm GKB GenePA162396617
Clinical trialN4BP2L1
Miscellaneous
canSAR (ICR)N4BP2L1 (select the gene name)
HarmonizomeN4BP2L1
DataMed IndexN4BP2L1
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineN4BP2L1
EVEXN4BP2L1
GoPubMedN4BP2L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:18:36 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.