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N4BP2L1 (NEDD4 binding protein 2 like 1)

Identity

Alias_symbol (synonym)CG018
Other alias
HGNC (Hugo) N4BP2L1
LocusID (NCBI) 90634
Atlas_Id 70650
Location 13q13.1  [Link to chromosome band 13q13]
Location_base_pair Starts at 32400723 and ends at 32428178 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
N4BP2L1 (13q13.1) / N4BP2L1 (13q13.1)N4BP2L1 (13q13.1) / ZBTB18 (1q44)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)N4BP2L1   25037
Cards
Entrez_Gene (NCBI)N4BP2L1  90634  NEDD4 binding protein 2 like 1
AliasesCG018
GeneCards (Weizmann)N4BP2L1
Ensembl hg19 (Hinxton)ENSG00000139597 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139597 [Gene_View]  chr13:32400723-32428178 [Contig_View]  N4BP2L1 [Vega]
ICGC DataPortalENSG00000139597
TCGA cBioPortalN4BP2L1
AceView (NCBI)N4BP2L1
Genatlas (Paris)N4BP2L1
WikiGenes90634
SOURCE (Princeton)N4BP2L1
Genetics Home Reference (NIH)N4BP2L1
Genomic and cartography
GoldenPath hg38 (UCSC)N4BP2L1  -     chr13:32400723-32428178 -  13q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)N4BP2L1  -     13q13.1   [Description]    (hg19-Feb_2009)
EnsemblN4BP2L1 - 13q13.1 [CytoView hg19]  N4BP2L1 - 13q13.1 [CytoView hg38]
Mapping of homologs : NCBIN4BP2L1 [Mapview hg19]  N4BP2L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI783635 AI916535 AL049785 AL049786 AL049787
RefSeq transcript (Entrez)NM_001079691 NM_001286459 NM_001286460 NM_001286461 NM_052818
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)N4BP2L1
Cluster EST : UnigeneHs.732118 [ NCBI ]
CGAP (NCI)Hs.732118
Alternative Splicing GalleryENSG00000139597
Gene ExpressionN4BP2L1 [ NCBI-GEO ]   N4BP2L1 [ EBI - ARRAY_EXPRESS ]   N4BP2L1 [ SEEK ]   N4BP2L1 [ MEM ]
Gene Expression Viewer (FireBrowse)N4BP2L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90634
GTEX Portal (Tissue expression)N4BP2L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TBK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TBK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TBK1
Splice isoforms : SwissVarQ5TBK1
PhosPhoSitePlusQ5TBK1
Domains : Interpro (EBI)NEDD4-bind_pro_2-like_1    P-loop_NTPase   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)N4BP2L1
DMDM Disease mutations90634
Blocks (Seattle)N4BP2L1
SuperfamilyQ5TBK1
Human Protein AtlasENSG00000139597
Peptide AtlasQ5TBK1
HPRD12384
IPIIPI00163804   IPI00102831   IPI01012776   IPI00513854   
Protein Interaction databases
DIP (DOE-UCLA)Q5TBK1
IntAct (EBI)Q5TBK1
FunCoupENSG00000139597
BioGRIDN4BP2L1
STRING (EMBL)N4BP2L1
ZODIACN4BP2L1
Ontologies - Pathways
QuickGOQ5TBK1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkN4BP2L1
Atlas of Cancer Signalling NetworkN4BP2L1
Wikipedia pathwaysN4BP2L1
Orthology - Evolution
OrthoDB90634
GeneTree (enSembl)ENSG00000139597
Phylogenetic Trees/Animal Genes : TreeFamN4BP2L1
HOVERGENQ5TBK1
HOGENOMQ5TBK1
Homologs : HomoloGeneN4BP2L1
Homology/Alignments : Family Browser (UCSC)N4BP2L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerN4BP2L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)N4BP2L1
dbVarN4BP2L1
ClinVarN4BP2L1
1000_GenomesN4BP2L1 
Exome Variant ServerN4BP2L1
ExAC (Exome Aggregation Consortium)N4BP2L1 (select the gene name)
Genetic variants : HAPMAP90634
Genomic Variants (DGV)N4BP2L1 [DGVbeta]
DECIPHERN4BP2L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisN4BP2L1 
Mutations
ICGC Data PortalN4BP2L1 
TCGA Data PortalN4BP2L1 
Broad Tumor PortalN4BP2L1
OASIS PortalN4BP2L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICN4BP2L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDN4BP2L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch N4BP2L1
DgiDB (Drug Gene Interaction Database)N4BP2L1
DoCM (Curated mutations)N4BP2L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)N4BP2L1 (select a term)
intoGenN4BP2L1
Cancer3DN4BP2L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenN4BP2L1
Genetic Testing Registry N4BP2L1
NextProtQ5TBK1 [Medical]
TSGene90634
GENETestsN4BP2L1
Target ValidationN4BP2L1
Huge Navigator N4BP2L1 [HugePedia]
snp3D : Map Gene to Disease90634
BioCentury BCIQN4BP2L1
ClinGenN4BP2L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90634
Chemical/Pharm GKB GenePA162396617
Clinical trialN4BP2L1
Miscellaneous
canSAR (ICR)N4BP2L1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineN4BP2L1
EVEXN4BP2L1
GoPubMedN4BP2L1
iHOPN4BP2L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:32:09 CEST 2017

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