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N4BP3 (NEDD4 binding protein 3)

Identity

Alias_symbol (synonym)LZTS4
Other alias
HGNC (Hugo) N4BP3
LocusID (NCBI) 23138
Atlas_Id 70653
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 178113555 and ends at 178126106 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)N4BP3   29852
Cards
Entrez_Gene (NCBI)N4BP3  23138  NEDD4 binding protein 3
AliasesLZTS4
GeneCards (Weizmann)N4BP3
Ensembl hg19 (Hinxton)ENSG00000145911 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145911 [Gene_View]  chr5:178113555-178126106 [Contig_View]  N4BP3 [Vega]
ICGC DataPortalENSG00000145911
TCGA cBioPortalN4BP3
AceView (NCBI)N4BP3
Genatlas (Paris)N4BP3
WikiGenes23138
SOURCE (Princeton)N4BP3
Genetics Home Reference (NIH)N4BP3
Genomic and cartography
GoldenPath hg38 (UCSC)N4BP3  -     chr5:178113555-178126106 +  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)N4BP3  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblN4BP3 - 5q35.3 [CytoView hg19]  N4BP3 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIN4BP3 [Mapview hg19]  N4BP3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB002339 AK127224 AK295663 BC027715 BC053323
RefSeq transcript (Entrez)NM_015111
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)N4BP3
Cluster EST : UnigeneHs.101761 [ NCBI ]
CGAP (NCI)Hs.101761
Alternative Splicing GalleryENSG00000145911
Gene ExpressionN4BP3 [ NCBI-GEO ]   N4BP3 [ EBI - ARRAY_EXPRESS ]   N4BP3 [ SEEK ]   N4BP3 [ MEM ]
Gene Expression Viewer (FireBrowse)N4BP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23138
GTEX Portal (Tissue expression)N4BP3
Human Protein AtlasENSG00000145911-N4BP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15049   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15049  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15049
Splice isoforms : SwissVarO15049
PhosPhoSitePlusO15049
Domains : Interpro (EBI)N4BP3   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)N4BP3
DMDM Disease mutations23138
Blocks (Seattle)N4BP3
SuperfamilyO15049
Human Protein Atlas [tissue]ENSG00000145911-N4BP3 [tissue]
Peptide AtlasO15049
IPIIPI00004500   
Protein Interaction databases
DIP (DOE-UCLA)O15049
IntAct (EBI)O15049
FunCoupENSG00000145911
BioGRIDN4BP3
STRING (EMBL)N4BP3
ZODIACN4BP3
Ontologies - Pathways
QuickGOO15049
Ontology : AmiGOprotein binding  cytoplasmic vesicle membrane  
Ontology : EGO-EBIprotein binding  cytoplasmic vesicle membrane  
NDEx NetworkN4BP3
Atlas of Cancer Signalling NetworkN4BP3
Wikipedia pathwaysN4BP3
Orthology - Evolution
OrthoDB23138
GeneTree (enSembl)ENSG00000145911
Phylogenetic Trees/Animal Genes : TreeFamN4BP3
HOVERGENO15049
HOGENOMO15049
Homologs : HomoloGeneN4BP3
Homology/Alignments : Family Browser (UCSC)N4BP3
Gene fusions - Rearrangements
Tumor Fusion PortalN4BP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerN4BP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)N4BP3
dbVarN4BP3
ClinVarN4BP3
1000_GenomesN4BP3 
Exome Variant ServerN4BP3
ExAC (Exome Aggregation Consortium)ENSG00000145911
GNOMAD BrowserENSG00000145911
Genetic variants : HAPMAP23138
Genomic Variants (DGV)N4BP3 [DGVbeta]
DECIPHERN4BP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisN4BP3 
Mutations
ICGC Data PortalN4BP3 
TCGA Data PortalN4BP3 
Broad Tumor PortalN4BP3
OASIS PortalN4BP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICN4BP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDN4BP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch N4BP3
DgiDB (Drug Gene Interaction Database)N4BP3
DoCM (Curated mutations)N4BP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)N4BP3 (select a term)
intoGenN4BP3
Cancer3DN4BP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETN4BP3
MedgenN4BP3
Genetic Testing Registry N4BP3
NextProtO15049 [Medical]
TSGene23138
GENETestsN4BP3
Target ValidationN4BP3
Huge Navigator N4BP3 [HugePedia]
snp3D : Map Gene to Disease23138
BioCentury BCIQN4BP3
ClinGenN4BP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23138
Chemical/Pharm GKB GenePA166048990
Clinical trialN4BP3
Miscellaneous
canSAR (ICR)N4BP3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineN4BP3
EVEXN4BP3
GoPubMedN4BP3
iHOPN4BP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:12:33 CET 2017

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