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N6AMT2 (N-6 adenine-specific DNA methyltransferase 2 (putative))

Identity

Other aliasESP13
HGNC (Hugo) N6AMT2
LocusID (NCBI) 221143
Atlas_Id 70655
Location 13q12.11  [Link to chromosome band 13q12]
Location_base_pair Starts at 21303073 and ends at 21348057 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)N6AMT2   27351
Cards
Entrez_Gene (NCBI)N6AMT2  221143  N-6 adenine-specific DNA methyltransferase 2 (putative)
AliasesESP13
GeneCards (Weizmann)N6AMT2
Ensembl hg19 (Hinxton)ENSG00000150456 [Gene_View]  chr13:21303073-21348057 [Contig_View]  N6AMT2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000150456 [Gene_View]  chr13:21303073-21348057 [Contig_View]  N6AMT2 [Vega]
ICGC DataPortalENSG00000150456
TCGA cBioPortalN6AMT2
AceView (NCBI)N6AMT2
Genatlas (Paris)N6AMT2
WikiGenes221143
SOURCE (Princeton)N6AMT2
Genetics Home Reference (NIH)N6AMT2
Genomic and cartography
GoldenPath hg19 (UCSC)N6AMT2  -     chr13:21303073-21348057 -  13q12.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)N6AMT2  -     13q12.11   [Description]    (hg38-Dec_2013)
EnsemblN6AMT2 - 13q12.11 [CytoView hg19]  N6AMT2 - 13q12.11 [CytoView hg38]
Mapping of homologs : NCBIN6AMT2 [Mapview hg19]  N6AMT2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK316604 BC018091 DQ823637 HQ447232
RefSeq transcript (Entrez)NM_174928
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)N6AMT2
Cluster EST : UnigeneHs.26674 [ NCBI ]
CGAP (NCI)Hs.26674
Alternative Splicing GalleryENSG00000150456
Gene ExpressionN6AMT2 [ NCBI-GEO ]   N6AMT2 [ EBI - ARRAY_EXPRESS ]   N6AMT2 [ SEEK ]   N6AMT2 [ MEM ]
Gene Expression Viewer (FireBrowse)N6AMT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221143
GTEX Portal (Tissue expression)N6AMT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVE0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVE0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVE0
Splice isoforms : SwissVarQ8WVE0
PhosPhoSitePlusQ8WVE0
Domains : Interpro (EBI)DNA_methylase_N6_adenine_CS    N6_adenine_Mtase-rel_euk    SAM-dependent_MTases   
Domain families : Pfam (Sanger)N6-adenineMlase (PF10237)   
Domain families : Pfam (NCBI)pfam10237   
Conserved Domain (NCBI)N6AMT2
DMDM Disease mutations221143
Blocks (Seattle)N6AMT2
SuperfamilyQ8WVE0
Human Protein AtlasENSG00000150456
Peptide AtlasQ8WVE0
HPRD14135
IPIIPI00103104   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVE0
IntAct (EBI)Q8WVE0
FunCoupENSG00000150456
BioGRIDN6AMT2
STRING (EMBL)N6AMT2
ZODIACN6AMT2
Ontologies - Pathways
QuickGOQ8WVE0
Ontology : AmiGOnucleic acid binding  cytoplasm  methyltransferase activity  methylation  extracellular exosome  
Ontology : EGO-EBInucleic acid binding  cytoplasm  methyltransferase activity  methylation  extracellular exosome  
NDEx NetworkN6AMT2
Atlas of Cancer Signalling NetworkN6AMT2
Wikipedia pathwaysN6AMT2
Orthology - Evolution
OrthoDB221143
GeneTree (enSembl)ENSG00000150456
Phylogenetic Trees/Animal Genes : TreeFamN6AMT2
HOVERGENQ8WVE0
HOGENOMQ8WVE0
Homologs : HomoloGeneN6AMT2
Homology/Alignments : Family Browser (UCSC)N6AMT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerN6AMT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)N6AMT2
dbVarN6AMT2
ClinVarN6AMT2
1000_GenomesN6AMT2 
Exome Variant ServerN6AMT2
ExAC (Exome Aggregation Consortium)N6AMT2 (select the gene name)
Genetic variants : HAPMAP221143
Genomic Variants (DGV)N6AMT2 [DGVbeta]
DECIPHER (Syndromes)13:21303073-21348057  ENSG00000150456
CONAN: Copy Number AnalysisN6AMT2 
Mutations
ICGC Data PortalN6AMT2 
TCGA Data PortalN6AMT2 
Broad Tumor PortalN6AMT2
OASIS PortalN6AMT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICN6AMT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDN6AMT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch N6AMT2
DgiDB (Drug Gene Interaction Database)N6AMT2
DoCM (Curated mutations)N6AMT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)N6AMT2 (select a term)
intoGenN6AMT2
Cancer3DN6AMT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenN6AMT2
Genetic Testing Registry N6AMT2
NextProtQ8WVE0 [Medical]
TSGene221143
GENETestsN6AMT2
Huge Navigator N6AMT2 [HugePedia]
snp3D : Map Gene to Disease221143
BioCentury BCIQN6AMT2
ClinGenN6AMT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221143
Chemical/Pharm GKB GenePA162396671
Clinical trialN6AMT2
Miscellaneous
canSAR (ICR)N6AMT2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineN6AMT2
EVEXN6AMT2
GoPubMedN6AMT2
iHOPN6AMT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:34:25 CET 2017

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