Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NAA25 (N-alpha-acetyltransferase 25, NatB auxiliary subunit)

Identity

Alias (NCBI)C12orf30
MDM20
NAP1
HGNC (Hugo) NAA25
HGNC Alias symbFLJ13089
HGNC Previous nameC12orf30
HGNC Previous namechromosome 12 open reading frame 30
LocusID (NCBI) 80018
Atlas_Id 70657
Location 12q24.13  [Link to chromosome band 12q24]
Location_base_pair Starts at 112026689 and ends at 112108831 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NAA25 (12q24.13) / FMR1 (Xq27.3)NAA25 (12q24.13) / SLC25A21 (14q13.3)NAA25 (12q24.13) / TBX5 (12q24.21)
SLC25A26 (3p14.1) / NAA25 (12q24.13)NAA25 TBX5NAA25 SLC25A21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  NAA25/TBX5 (12q24)
t(12;14)(q24;q13) NAA25/SLC25A21

External links

Nomenclature
HGNC (Hugo)NAA25   25783
Cards
Entrez_Gene (NCBI)NAA25    N-alpha-acetyltransferase 25, NatB auxiliary subunit
AliasesC12orf30; MDM20; NAP1
GeneCards (Weizmann)NAA25
Ensembl hg19 (Hinxton)ENSG00000111300 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111300 [Gene_View]  ENSG00000111300 [Sequence]  chr12:112026689-112108831 [Contig_View]  NAA25 [Vega]
ICGC DataPortalENSG00000111300
TCGA cBioPortalNAA25
AceView (NCBI)NAA25
Genatlas (Paris)NAA25
SOURCE (Princeton)NAA25
Genetics Home Reference (NIH)NAA25
Genomic and cartography
GoldenPath hg38 (UCSC)NAA25  -     chr12:112026689-112108831 -  12q24.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NAA25  -     12q24.13   [Description]    (hg19-Feb_2009)
GoldenPathNAA25 - 12q24.13 [CytoView hg19]  NAA25 - 12q24.13 [CytoView hg38]
ImmunoBaseENSG00000111300
genome Data Viewer NCBINAA25 [Mapview hg19]  
OMIM612755   
Gene and transcription
Genbank (Entrez)AA653507 AB054990 AK023151 AK292485 AK307494
RefSeq transcript (Entrez)NM_024953
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NAA25
Alternative Splicing GalleryENSG00000111300
Gene ExpressionNAA25 [ NCBI-GEO ]   NAA25 [ EBI - ARRAY_EXPRESS ]   NAA25 [ SEEK ]   NAA25 [ MEM ]
Gene Expression Viewer (FireBrowse)NAA25 [ Firebrowse - Broad ]
GenevisibleExpression of NAA25 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80018
GTEX Portal (Tissue expression)NAA25
Human Protein AtlasENSG00000111300-NAA25 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14CX7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14CX7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14CX7
Splice isoforms : SwissVarQ14CX7
PhosPhoSitePlusQ14CX7
Domaine pattern : Prosite (Expaxy)TPR_REGION (PS50293)   
Domains : Interpro (EBI)N-acetylTrfase_B_cplx_non-cat    TPR-contain_dom    TPR-like_helical_dom_sf   
Domain families : Pfam (Sanger)NatB_MDM20 (PF09797)   
Domain families : Pfam (NCBI)pfam09797   
Conserved Domain (NCBI)NAA25
Blocks (Seattle)NAA25
SuperfamilyQ14CX7
Human Protein Atlas [tissue]ENSG00000111300-NAA25 [tissue]
Peptide AtlasQ14CX7
HPRD08578
IPIIPI00025890   IPI00852843   IPI01021012   IPI01020859   IPI01021847   IPI01021635   
Protein Interaction databases
DIP (DOE-UCLA)Q14CX7
IntAct (EBI)Q14CX7
BioGRIDNAA25
STRING (EMBL)NAA25
ZODIACNAA25
Ontologies - Pathways
QuickGOQ14CX7
Ontology : AmiGOpeptide alpha-N-acetyltransferase activity  cytoplasm  Golgi apparatus  cytosol  N-terminal peptidyl-methionine acetylation  NatB complex  
Ontology : EGO-EBIpeptide alpha-N-acetyltransferase activity  cytoplasm  Golgi apparatus  cytosol  N-terminal peptidyl-methionine acetylation  NatB complex  
NDEx NetworkNAA25
Atlas of Cancer Signalling NetworkNAA25
Wikipedia pathwaysNAA25
Orthology - Evolution
OrthoDB80018
GeneTree (enSembl)ENSG00000111300
Phylogenetic Trees/Animal Genes : TreeFamNAA25
HOGENOMQ14CX7
Homologs : HomoloGeneNAA25
Homology/Alignments : Family Browser (UCSC)NAA25
Gene fusions - Rearrangements
Fusion PortalNAA25 TBX5
Fusion PortalNAA25 SLC25A21
Fusion : QuiverNAA25
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNAA25 [hg38]
dbVarNAA25
ClinVarNAA25
MonarchNAA25
1000_GenomesNAA25 
Exome Variant ServerNAA25
GNOMAD BrowserENSG00000111300
Varsome BrowserNAA25
Genomic Variants (DGV)NAA25 [DGVbeta]
DECIPHERNAA25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNAA25 
Mutations
ICGC Data PortalNAA25 
TCGA Data PortalNAA25 
Broad Tumor PortalNAA25
OASIS PortalNAA25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNAA25  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNAA25
Mutations and Diseases : HGMDNAA25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NAA25
DgiDB (Drug Gene Interaction Database)NAA25
DoCM (Curated mutations)NAA25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NAA25 (select a term)
intoGenNAA25
Cancer3DNAA25(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612755   
Orphanet
DisGeNETNAA25
MedgenNAA25
Genetic Testing Registry NAA25
NextProtQ14CX7 [Medical]
GENETestsNAA25
Target ValidationNAA25
Huge Navigator NAA25 [HugePedia]
ClinGenNAA25
Clinical trials, drugs, therapy
MyCancerGenomeNAA25
Protein Interactions : CTD
Pharm GKB GenePA165513030
Clinical trialNAA25
Miscellaneous
canSAR (ICR)NAA25 (select the gene name)
HarmonizomeNAA25
DataMed IndexNAA25
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNAA25
EVEXNAA25
GoPubMedNAA25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:18:37 CET 2020
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.