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NAA38 (N(alpha)-acetyltransferase 38, NatC auxiliary subunit)

Identity

Alias_namesLSMD1
LSM domain containing 1
Alias_symbol (synonym)MGC14151
PFAAP2
Other alias
HGNC (Hugo) NAA38
LocusID (NCBI) 84316
Atlas_Id 70659
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7760003 and ends at 7761172 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NAA38 (17p13.1) / NAA38 (17p13.1)NAA38 (17p13.1) / RNF183 (9q32)NAA38 (17p13.1) / YLPM1 (14q24.3)
RBMS2 (12q13.3) / NAA38 (17p13.1)TLCD2 (17p13.3) / NAA38 (17p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NAA38   28212
Cards
Entrez_Gene (NCBI)NAA38  84316  N(alpha)-acetyltransferase 38, NatC auxiliary subunit
AliasesLSMD1; PFAAP2
GeneCards (Weizmann)NAA38
Ensembl hg19 (Hinxton)ENSG00000183011 [Gene_View]  chr17:7760003-7761172 [Contig_View]  NAA38 [Vega]
Ensembl hg38 (Hinxton)ENSG00000183011 [Gene_View]  chr17:7760003-7761172 [Contig_View]  NAA38 [Vega]
ICGC DataPortalENSG00000183011
TCGA cBioPortalNAA38
AceView (NCBI)NAA38
Genatlas (Paris)NAA38
WikiGenes84316
SOURCE (Princeton)NAA38
Genetics Home Reference (NIH)NAA38
Genomic and cartography
GoldenPath hg19 (UCSC)NAA38  -     chr17:7760003-7761172 -  17p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NAA38  -     17p13.1   [Description]    (hg38-Dec_2013)
EnsemblNAA38 - 17p13.1 [CytoView hg19]  NAA38 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBINAA38 [Mapview hg19]  NAA38 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF530060 BC006407 BC033861 BC051846 BC059944
RefSeq transcript (Entrez)NM_032356
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)NAA38
Cluster EST : UnigeneHs.565094 [ NCBI ]
CGAP (NCI)Hs.565094
Alternative Splicing GalleryENSG00000183011
Gene ExpressionNAA38 [ NCBI-GEO ]   NAA38 [ EBI - ARRAY_EXPRESS ]   NAA38 [ SEEK ]   NAA38 [ MEM ]
Gene Expression Viewer (FireBrowse)NAA38 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84316
GTEX Portal (Tissue expression)NAA38
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95777   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95777  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95777
Splice isoforms : SwissVarO95777
PhosPhoSitePlusO95777
Domains : Interpro (EBI)LSM_dom    Ribonucl_LSM    Ribonucl_LSM_euk/arc   
Domain families : Pfam (Sanger)LSM (PF01423)   
Domain families : Pfam (NCBI)pfam01423   
Domain families : Smart (EMBL)Sm (SM00651)  
Conserved Domain (NCBI)NAA38
DMDM Disease mutations84316
Blocks (Seattle)NAA38
SuperfamilyO95777
Human Protein AtlasENSG00000183011
Peptide AtlasO95777
HPRD17491
IPIIPI00304922   IPI00384274   
Protein Interaction databases
DIP (DOE-UCLA)O95777
IntAct (EBI)O95777
FunCoupENSG00000183011
BioGRIDNAA38
STRING (EMBL)NAA38
ZODIACNAA38
Ontologies - Pathways
QuickGOO95777
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  cytoplasm  polysome  NatC complex  negative regulation of apoptotic process  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  cytoplasm  polysome  NatC complex  negative regulation of apoptotic process  
Pathways : KEGGRNA degradation    Spliceosome   
NDEx NetworkNAA38
Atlas of Cancer Signalling NetworkNAA38
Wikipedia pathwaysNAA38
Orthology - Evolution
OrthoDB84316
GeneTree (enSembl)ENSG00000183011
Phylogenetic Trees/Animal Genes : TreeFamNAA38
HOVERGENO95777
HOGENOMO95777
Homologs : HomoloGeneNAA38
Homology/Alignments : Family Browser (UCSC)NAA38
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNAA38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NAA38
dbVarNAA38
ClinVarNAA38
1000_GenomesNAA38 
Exome Variant ServerNAA38
ExAC (Exome Aggregation Consortium)NAA38 (select the gene name)
Genetic variants : HAPMAP84316
Genomic Variants (DGV)NAA38 [DGVbeta]
DECIPHER (Syndromes)17:7760003-7761172  ENSG00000183011
CONAN: Copy Number AnalysisNAA38 
Mutations
ICGC Data PortalNAA38 
TCGA Data PortalNAA38 
Broad Tumor PortalNAA38
OASIS PortalNAA38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNAA38  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNAA38
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NAA38
DgiDB (Drug Gene Interaction Database)NAA38
DoCM (Curated mutations)NAA38 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NAA38 (select a term)
intoGenNAA38
Cancer3DNAA38(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNAA38
Genetic Testing Registry NAA38
NextProtO95777 [Medical]
TSGene84316
GENETestsNAA38
Huge Navigator NAA38 [HugePedia]
snp3D : Map Gene to Disease84316
BioCentury BCIQNAA38
ClinGenNAA38
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84316
Chemical/Pharm GKB GenePA142671503
Clinical trialNAA38
Miscellaneous
canSAR (ICR)NAA38 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNAA38
EVEXNAA38
GoPubMedNAA38
iHOPNAA38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:34:25 CET 2017

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