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NAA40 (N(alpha)-acetyltransferase 40, NatD catalytic subunit)

Identity

Alias_namesNAT11
N-acetyltransferase 11
N-acetyltransferase 11 (GCN5-related, putative)
N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ13848
Other aliasNatD
PATT1
hNatD
HGNC (Hugo) NAA40
LocusID (NCBI) 79829
Atlas_Id 51594
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 63939331 and ends at 63957319 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NAA40 (11q13.1) / NAA40 (11q13.1)S100A6 (1q21.3) / NAA40 (11q13.1)TCF3 (19p13.3) / NAA40 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NAA40   25845
Cards
Entrez_Gene (NCBI)NAA40  79829  N(alpha)-acetyltransferase 40, NatD catalytic subunit
AliasesNAT11; NatD; PATT1; hNatD
GeneCards (Weizmann)NAA40
Ensembl hg19 (Hinxton)ENSG00000110583 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110583 [Gene_View]  chr11:63939331-63957319 [Contig_View]  NAA40 [Vega]
ICGC DataPortalENSG00000110583
TCGA cBioPortalNAA40
AceView (NCBI)NAA40
Genatlas (Paris)NAA40
WikiGenes79829
SOURCE (Princeton)NAA40
Genetics Home Reference (NIH)NAA40
Genomic and cartography
GoldenPath hg38 (UCSC)NAA40  -     chr11:63939331-63957319 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NAA40  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblNAA40 - 11q13.1 [CytoView hg19]  NAA40 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBINAA40 [Mapview hg19]  NAA40 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023910 AK299041 AK300451 AK303557 BC024160
RefSeq transcript (Entrez)NM_001300800 NM_024771
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NAA40
Cluster EST : UnigeneHs.523753 [ NCBI ]
CGAP (NCI)Hs.523753
Alternative Splicing GalleryENSG00000110583
Gene ExpressionNAA40 [ NCBI-GEO ]   NAA40 [ EBI - ARRAY_EXPRESS ]   NAA40 [ SEEK ]   NAA40 [ MEM ]
Gene Expression Viewer (FireBrowse)NAA40 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79829
GTEX Portal (Tissue expression)NAA40
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UY6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UY6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UY6
Splice isoforms : SwissVarQ86UY6
PhosPhoSitePlusQ86UY6
Domaine pattern : Prosite (Expaxy)GNAT (PS51186)   
Domains : Interpro (EBI)Acyl_CoA_acyltransferase    GNAT_dom   
Domain families : Pfam (Sanger)Acetyltransf_1 (PF00583)   
Domain families : Pfam (NCBI)pfam00583   
Conserved Domain (NCBI)NAA40
DMDM Disease mutations79829
Blocks (Seattle)NAA40
PDB (SRS)4U9V    4U9W   
PDB (PDBSum)4U9V    4U9W   
PDB (IMB)4U9V    4U9W   
PDB (RSDB)4U9V    4U9W   
Structural Biology KnowledgeBase4U9V    4U9W   
SCOP (Structural Classification of Proteins)4U9V    4U9W   
CATH (Classification of proteins structures)4U9V    4U9W   
SuperfamilyQ86UY6
Human Protein AtlasENSG00000110583
Peptide AtlasQ86UY6
HPRD07838
IPIIPI00328847   IPI00908915   IPI01015622   IPI01012996   IPI01016007   IPI01013870   
Protein Interaction databases
DIP (DOE-UCLA)Q86UY6
IntAct (EBI)Q86UY6
FunCoupENSG00000110583
BioGRIDNAA40
STRING (EMBL)NAA40
ZODIACNAA40
Ontologies - Pathways
QuickGOQ86UY6
Ontology : AmiGOnucleus  cytoplasm  N-terminal protein amino acid acetylation  lipid metabolic process  H4 histone acetyltransferase activity  histone H4 acetylation  histone H2A acetylation  H2A histone acetyltransferase activity  peptide-serine-N-acetyltransferase activity  
Ontology : EGO-EBInucleus  cytoplasm  N-terminal protein amino acid acetylation  lipid metabolic process  H4 histone acetyltransferase activity  histone H4 acetylation  histone H2A acetylation  H2A histone acetyltransferase activity  peptide-serine-N-acetyltransferase activity  
NDEx NetworkNAA40
Atlas of Cancer Signalling NetworkNAA40
Wikipedia pathwaysNAA40
Orthology - Evolution
OrthoDB79829
GeneTree (enSembl)ENSG00000110583
Phylogenetic Trees/Animal Genes : TreeFamNAA40
HOVERGENQ86UY6
HOGENOMQ86UY6
Homologs : HomoloGeneNAA40
Homology/Alignments : Family Browser (UCSC)NAA40
Gene fusions - Rearrangements
Fusion Cancer (Beijing)S100A6 [1q21.3]  -  NAA40 [11q13.1]  [FUSC002900]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNAA40 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NAA40
dbVarNAA40
ClinVarNAA40
1000_GenomesNAA40 
Exome Variant ServerNAA40
ExAC (Exome Aggregation Consortium)NAA40 (select the gene name)
Genetic variants : HAPMAP79829
Genomic Variants (DGV)NAA40 [DGVbeta]
DECIPHERNAA40 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNAA40 
Mutations
ICGC Data PortalNAA40 
TCGA Data PortalNAA40 
Broad Tumor PortalNAA40
OASIS PortalNAA40 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNAA40  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNAA40
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NAA40
DgiDB (Drug Gene Interaction Database)NAA40
DoCM (Curated mutations)NAA40 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NAA40 (select a term)
intoGenNAA40
Cancer3DNAA40(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNAA40
Genetic Testing Registry NAA40
NextProtQ86UY6 [Medical]
TSGene79829
GENETestsNAA40
Target ValidationNAA40
Huge Navigator NAA40 [HugePedia]
snp3D : Map Gene to Disease79829
BioCentury BCIQNAA40
ClinGenNAA40
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79829
Chemical/Pharm GKB GenePA165543497
Clinical trialNAA40
Miscellaneous
canSAR (ICR)NAA40 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNAA40
EVEXNAA40
GoPubMedNAA40
iHOPNAA40
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:21:16 CEST 2017

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