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NAB1 (NGFI-A binding protein 1)

Identity

Alias_namesNGFI-A binding protein 1 (EGR1 binding protein 1)
Other alias-
HGNC (Hugo) NAB1
LocusID (NCBI) 4664
Atlas_Id 46652
Location 2q32.2  [Link to chromosome band 2q32]
Location_base_pair Starts at 190649070 and ends at 190692766 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATIC (2q35) / NAB1 (2q32.2)CDKAL1 (6p22.3) / NAB1 (2q32.2)LAMB3 (1q32.2) / NAB1 (2q32.2)
NAB1 (2q32.2) / NAB1 (2q32.2)NAB1 (2q32.2) / STEAP3 (2q14.2)SF1 (11q13.1) / NAB1 (2q32.2)
LAMB3 1q32.2 / NAB1 2q32.2NAB1 2q32.2 / STEAP3 2q14.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NAB1   7626
Cards
Entrez_Gene (NCBI)NAB1  4664  NGFI-A binding protein 1
Aliases
GeneCards (Weizmann)NAB1
Ensembl hg19 (Hinxton)ENSG00000138386 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138386 [Gene_View]  chr2:190649070-190692766 [Contig_View]  NAB1 [Vega]
ICGC DataPortalENSG00000138386
TCGA cBioPortalNAB1
AceView (NCBI)NAB1
Genatlas (Paris)NAB1
WikiGenes4664
SOURCE (Princeton)NAB1
Genetics Home Reference (NIH)NAB1
Genomic and cartography
GoldenPath hg38 (UCSC)NAB1  -     chr2:190649070-190692766 +  2q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NAB1  -     2q32.2   [Description]    (hg19-Feb_2009)
EnsemblNAB1 - 2q32.2 [CytoView hg19]  NAB1 - 2q32.2 [CytoView hg38]
Mapping of homologs : NCBINAB1 [Mapview hg19]  NAB1 [Mapview hg38]
OMIM600800   
Gene and transcription
Genbank (Entrez)AF045451 AF045452 AK292446 AK296549 AK313542
RefSeq transcript (Entrez)NM_001321312 NM_001321313 NM_001321314 NM_001321315 NM_005966
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NAB1
Cluster EST : UnigeneHs.107474 [ NCBI ]
CGAP (NCI)Hs.107474
Alternative Splicing GalleryENSG00000138386
Gene ExpressionNAB1 [ NCBI-GEO ]   NAB1 [ EBI - ARRAY_EXPRESS ]   NAB1 [ SEEK ]   NAB1 [ MEM ]
Gene Expression Viewer (FireBrowse)NAB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4664
GTEX Portal (Tissue expression)NAB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13506   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13506  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13506
Splice isoforms : SwissVarQ13506
PhosPhoSitePlusQ13506
Domains : Interpro (EBI)Nab1_C    NAB_co-repressor_dom    Nab_N   
Domain families : Pfam (Sanger)Nab1 (PF04902)    NCD1 (PF04904)    NCD2 (PF04905)   
Domain families : Pfam (NCBI)pfam04902    pfam04904    pfam04905   
Domain structure : Prodom (Prabi Lyon)Nab_N (PD342192)   
Conserved Domain (NCBI)NAB1
DMDM Disease mutations4664
Blocks (Seattle)NAB1
PDB (SRS)2YUF   
PDB (PDBSum)2YUF   
PDB (IMB)2YUF   
PDB (RSDB)2YUF   
Structural Biology KnowledgeBase2YUF   
SCOP (Structural Classification of Proteins)2YUF   
CATH (Classification of proteins structures)2YUF   
SuperfamilyQ13506
Human Protein AtlasENSG00000138386
Peptide AtlasQ13506
HPRD02881
IPIIPI00336119   IPI00220133   IPI00939230   IPI01026105   IPI00916539   IPI00916862   IPI00917111   IPI00916943   IPI00917438   
Protein Interaction databases
DIP (DOE-UCLA)Q13506
IntAct (EBI)Q13506
FunCoupENSG00000138386
BioGRIDNAB1
STRING (EMBL)NAB1
ZODIACNAB1
Ontologies - Pathways
QuickGOQ13506
Ontology : AmiGOendochondral ossification  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  transcription factor binding  Schwann cell differentiation  myelination  regulation of epidermis development  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIendochondral ossification  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  transcription factor binding  Schwann cell differentiation  myelination  regulation of epidermis development  negative regulation of transcription, DNA-templated  
NDEx NetworkNAB1
Atlas of Cancer Signalling NetworkNAB1
Wikipedia pathwaysNAB1
Orthology - Evolution
OrthoDB4664
GeneTree (enSembl)ENSG00000138386
Phylogenetic Trees/Animal Genes : TreeFamNAB1
HOVERGENQ13506
HOGENOMQ13506
Homologs : HomoloGeneNAB1
Homology/Alignments : Family Browser (UCSC)NAB1
Gene fusions - Rearrangements
Fusion : MitelmanLAMB3/NAB1 [1q32.2/2q32.2]  [t(1;2)(q32;q32)]  
Fusion : MitelmanNAB1/STEAP3 [2q32.2/2q14.2]  [t(2;2)(q14;q32)]  
Fusion: TCGALAMB3 1q32.2 NAB1 2q32.2 HNSC
Fusion: TCGANAB1 2q32.2 STEAP3 2q14.2 SKCM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNAB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NAB1
dbVarNAB1
ClinVarNAB1
1000_GenomesNAB1 
Exome Variant ServerNAB1
ExAC (Exome Aggregation Consortium)NAB1 (select the gene name)
Genetic variants : HAPMAP4664
Genomic Variants (DGV)NAB1 [DGVbeta]
DECIPHERNAB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNAB1 
Mutations
ICGC Data PortalNAB1 
TCGA Data PortalNAB1 
Broad Tumor PortalNAB1
OASIS PortalNAB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNAB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNAB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NAB1
DgiDB (Drug Gene Interaction Database)NAB1
DoCM (Curated mutations)NAB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NAB1 (select a term)
intoGenNAB1
Cancer3DNAB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600800   
Orphanet
MedgenNAB1
Genetic Testing Registry NAB1
NextProtQ13506 [Medical]
TSGene4664
GENETestsNAB1
Target ValidationNAB1
Huge Navigator NAB1 [HugePedia]
snp3D : Map Gene to Disease4664
BioCentury BCIQNAB1
ClinGenNAB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4664
Chemical/Pharm GKB GenePA31431
Clinical trialNAB1
Miscellaneous
canSAR (ICR)NAB1 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNAB1
EVEXNAB1
GoPubMedNAB1
iHOPNAB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:21:17 CEST 2017

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