| Nomenclature |
|---|
| HGNC (Hugo) | NAB2 7627 |
| Cards |
|---|
| Entrez_Gene (NCBI) | NAB2 4665 NGFI-A binding protein 2 |
| Aliases | MADER |
| GeneCards (Weizmann) | NAB2 |
| Ensembl hg19 (Hinxton) | ENSG00000166886 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000166886 [Gene_View] ENSG00000166886 [Sequence] chr12:57088894-57095476 [Contig_View] NAB2 [Vega] |
| ICGC DataPortal | ENSG00000166886 |
| TCGA cBioPortal | NAB2 |
| AceView (NCBI) | NAB2 |
| Genatlas (Paris) | NAB2 |
| WikiGenes | 4665 |
| SOURCE (Princeton) | NAB2 |
| Genetics Home Reference (NIH) | NAB2 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | NAB2 - chr12:57088894-57095476 + 12q13.3 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | NAB2 - 12q13.3 [Description] (hg19-Feb_2009) |
| Ensembl | NAB2 - 12q13.3 [CytoView hg19] NAB2 - 12q13.3 [CytoView hg38] |
| Mapping of homologs : NCBI | NAB2 [Mapview hg19] NAB2 [Mapview hg38] |
| OMIM | 602381 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AK314229 BC007756 BC065931 BQ956141 DA496543 |
| RefSeq transcript (Entrez) | NM_001330305 NM_005967 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | NAB2 |
| Cluster EST : Unigene | Hs.159223 [ NCBI ] |
| CGAP (NCI) | Hs.159223 |
| Alternative Splicing Gallery | ENSG00000166886 |
| Gene Expression | NAB2 [ NCBI-GEO ] NAB2 [ EBI - ARRAY_EXPRESS ]
NAB2 [ SEEK ] NAB2 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | NAB2 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 4665 |
| GTEX Portal (Tissue expression) | NAB2 |
| Human Protein Atlas | ENSG00000166886-NAB2 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q15742 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q15742 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q15742 |
| Splice isoforms : SwissVar | Q15742 |
| PhosPhoSitePlus | Q15742 |
| Domains : Interpro (EBI) | NAB_co-repressor_dom Nab_N NCD2_sf |
| Domain families : Pfam (Sanger) | NCD1 (PF04904) NCD2 (PF04905) |
| Domain families : Pfam (NCBI) | pfam04904 pfam04905 |
| Domain structure : Prodom (Prabi Lyon) | Nab_N (PD342192) |
| Conserved Domain (NCBI) | NAB2 |
| DMDM Disease mutations | 4665 |
| Blocks (Seattle) | NAB2 |
| Superfamily | Q15742 |
| Human Protein Atlas [tissue] | ENSG00000166886-NAB2 [tissue] |
| Peptide Atlas | Q15742 |
| HPRD | 03854 |
| IPI | IPI00019432 IPI00220866 IPI00220867 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q15742 |
| IntAct (EBI) | Q15742 |
| FunCoup | ENSG00000166886 |
| BioGRID | NAB2 |
| STRING (EMBL) | NAB2 |
| ZODIAC | NAB2 |
| Ontologies - Pathways |
|---|
| QuickGO | Q15742 |
| Ontology : AmiGO | transcription factor activity, transcription factor binding endochondral ossification transcription corepressor activity protein binding nucleus nucleus transcription, DNA-templated regulation of transcription, DNA-templated nervous system development transcription factor binding cell proliferation Schwann cell differentiation negative regulation of transcription by RNA polymerase III myelination identical protein binding regulation of epidermis development positive regulation of tau-protein kinase activity |
| Ontology : EGO-EBI | transcription factor activity, transcription factor binding endochondral ossification transcription corepressor activity protein binding nucleus nucleus transcription, DNA-templated regulation of transcription, DNA-templated nervous system development transcription factor binding cell proliferation Schwann cell differentiation negative regulation of transcription by RNA polymerase III myelination identical protein binding regulation of epidermis development positive regulation of tau-protein kinase activity |
| NDEx Network | NAB2 |
| Atlas of Cancer Signalling Network | NAB2 |
| Wikipedia pathways | NAB2 |
| Orthology - Evolution |
|---|
| OrthoDB | 4665 |
| GeneTree (enSembl) | ENSG00000166886 |
| Phylogenetic Trees/Animal Genes : TreeFam | NAB2 |
| HOVERGEN | Q15742 |
| HOGENOM | Q15742 |
| Homologs : HomoloGene | NAB2 |
| Homology/Alignments : Family Browser (UCSC) | NAB2 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Mitelman | NAB2/PDGFRB [12q13.3/5q32] |
| Fusion : Mitelman | NAB2/STAT6 [12q13.3/12q13.3] [inv(12)(q13q13)] [t(12;12)(q13;q13)] |
| |
| Fusion : Quiver | NAB2 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | NAB2 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | NAB2 |
| dbVar | NAB2 |
| ClinVar | NAB2 |
| 1000_Genomes | NAB2 |
| Exome Variant Server | NAB2 |
| ExAC (Exome Aggregation Consortium) | ENSG00000166886 |
| GNOMAD Browser | ENSG00000166886 |
| Varsome Browser | NAB2 |
| Genetic variants : HAPMAP | 4665 |
| Genomic Variants (DGV) | NAB2 [DGVbeta] |
| DECIPHER | NAB2 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | NAB2 |
| Mutations |
|---|
| ICGC Data Portal | NAB2 |
| TCGA Data Portal | NAB2 |
| Broad Tumor Portal | NAB2 |
| OASIS Portal | NAB2 [ Somatic mutations - Copy number] |
| Cancer Gene: Census | NAB2 |
| Somatic Mutations in Cancer : COSMIC | NAB2 [overview] [genome browser] [tissue] [distribution] |
| Mutations and Diseases : HGMD | NAB2 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search NAB2 |
| DgiDB (Drug Gene Interaction Database) | NAB2 |
| DoCM (Curated mutations) | NAB2 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | NAB2 (select a term) |
| intoGen | NAB2 |
| Cancer3D | NAB2(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 602381 |
| Orphanet | 3735 |
| DisGeNET | NAB2 |
| Medgen | NAB2 |
| Genetic Testing Registry | NAB2
|
| NextProt | Q15742 [Medical] |
| TSGene | 4665 |
| GENETests | NAB2 |
| Target Validation | NAB2 |
| Huge Navigator |
NAB2 [HugePedia] |
| snp3D : Map Gene to Disease | 4665 |
| BioCentury BCIQ | NAB2 |
| ClinGen | NAB2 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 4665 |
| Chemical/Pharm GKB Gene | PA31432 |
| Clinical trial | NAB2 |
| Miscellaneous |
|---|
| canSAR (ICR) | NAB2 (select the gene name) |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 57 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | NAB2 |
| EVEX | NAB2 |
| GoPubMed | NAB2 |
| iHOP | NAB2 |
