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NAB2 (NGFI-A binding protein 2)

Identity

Alias_namesNGFI-A binding protein 2 (EGR1 binding protein 2)
Alias_symbol (synonym)MADER
Other alias
HGNC (Hugo) NAB2
LocusID (NCBI) 4665
Atlas_Id 53246
Location 12q13.3  [Link to chromosome band 12q13]
Location_base_pair Starts at 57088894 and ends at 57095476 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		NAB2 (12q13.3) / PDGFRB (5q32)NAB2 (12q13.3) / STAT6 (12q13.3)STAT6 (12q13.3) / NAB2 (12q13.3)
NAB2 12q13.3 / STAT6 12q13.3STAT6 12q13.3 / NAB2 12q13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Soft tissue tumors: an overview

External links

Nomenclature
HGNC (Hugo)NAB2   7627
Cards
Entrez_Gene (NCBI)NAB2  4665  NGFI-A binding protein 2
AliasesMADER
GeneCards (Weizmann)NAB2
Ensembl hg19 (Hinxton)ENSG00000166886 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166886 [Gene_View]  chr12:57088894-57095476 [Contig_View]  NAB2 [Vega]
ICGC DataPortalENSG00000166886
TCGA cBioPortalNAB2
AceView (NCBI)NAB2
Genatlas (Paris)NAB2
WikiGenes4665
SOURCE (Princeton)NAB2
Genetics Home Reference (NIH)NAB2
Genomic and cartography
GoldenPath hg38 (UCSC)NAB2  -     chr12:57088894-57095476 +  12q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NAB2  -     12q13.3   [Description]    (hg19-Feb_2009)
EnsemblNAB2 - 12q13.3 [CytoView hg19]  NAB2 - 12q13.3 [CytoView hg38]
Mapping of homologs : NCBINAB2 [Mapview hg19]  NAB2 [Mapview hg38]
OMIM602381   
Gene and transcription
Genbank (Entrez)AK314229 BC007756 BC065931 BQ956141 DA496543
RefSeq transcript (Entrez)NM_001330305 NM_005967
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NAB2
Cluster EST : UnigeneHs.159223 [ NCBI ]
CGAP (NCI)Hs.159223
Alternative Splicing GalleryENSG00000166886
Gene ExpressionNAB2 [ NCBI-GEO ]   NAB2 [ EBI - ARRAY_EXPRESS ]   NAB2 [ SEEK ]   NAB2 [ MEM ]
Gene Expression Viewer (FireBrowse)NAB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4665
GTEX Portal (Tissue expression)NAB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15742   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15742  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15742
Splice isoforms : SwissVarQ15742
PhosPhoSitePlusQ15742
Domains : Interpro (EBI)NAB_co-repressor_dom    Nab_N    SAM/pointed   
Domain families : Pfam (Sanger)NCD1 (PF04904)    NCD2 (PF04905)   
Domain families : Pfam (NCBI)pfam04904    pfam04905   
Domain structure : Prodom (Prabi Lyon)Nab_N (PD342192)   
Conserved Domain (NCBI)NAB2
DMDM Disease mutations4665
Blocks (Seattle)NAB2
SuperfamilyQ15742
Human Protein AtlasENSG00000166886
Peptide AtlasQ15742
HPRD03854
IPIIPI00019432   IPI00220866   IPI00220867   
Protein Interaction databases
DIP (DOE-UCLA)Q15742
IntAct (EBI)Q15742
FunCoupENSG00000166886
BioGRIDNAB2
STRING (EMBL)NAB2
ZODIACNAB2
Ontologies - Pathways
QuickGOQ15742
Ontology : AmiGOendochondral ossification  transcription corepressor activity  protein binding  nucleus  transcription, DNA-templated  nervous system development  transcription factor binding  cell proliferation  Schwann cell differentiation  negative regulation of transcription from RNA polymerase III promoter  myelination  identical protein binding  regulation of epidermis development  
Ontology : EGO-EBIendochondral ossification  transcription corepressor activity  protein binding  nucleus  transcription, DNA-templated  nervous system development  transcription factor binding  cell proliferation  Schwann cell differentiation  negative regulation of transcription from RNA polymerase III promoter  myelination  identical protein binding  regulation of epidermis development  
NDEx NetworkNAB2
Atlas of Cancer Signalling NetworkNAB2
Wikipedia pathwaysNAB2
Orthology - Evolution
OrthoDB4665
GeneTree (enSembl)ENSG00000166886
Phylogenetic Trees/Animal Genes : TreeFamNAB2
HOVERGENQ15742
HOGENOMQ15742
Homologs : HomoloGeneNAB2
Homology/Alignments : Family Browser (UCSC)NAB2
Gene fusions - Rearrangements
Fusion : MitelmanNAB2/PDGFRB [12q13.3/5q32]  
Fusion : MitelmanNAB2/STAT6 [12q13.3/12q13.3]  [inv(12)(q13q13)]  [t(12;12)(q13;q13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNAB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NAB2
dbVarNAB2
ClinVarNAB2
1000_GenomesNAB2 
Exome Variant ServerNAB2
ExAC (Exome Aggregation Consortium)NAB2 (select the gene name)
Genetic variants : HAPMAP4665
Genomic Variants (DGV)NAB2 [DGVbeta]
DECIPHERNAB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNAB2 
Mutations
ICGC Data PortalNAB2 
TCGA Data PortalNAB2 
Broad Tumor PortalNAB2
OASIS PortalNAB2 [ Somatic mutations - Copy number]
Cancer Gene: CensusNAB2 
Somatic Mutations in Cancer : COSMICNAB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNAB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NAB2
DgiDB (Drug Gene Interaction Database)NAB2
DoCM (Curated mutations)NAB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NAB2 (select a term)
intoGenNAB2
Cancer3DNAB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602381   
Orphanet3735   
MedgenNAB2
Genetic Testing Registry NAB2
NextProtQ15742 [Medical]
TSGene4665
GENETestsNAB2
Target ValidationNAB2
Huge Navigator NAB2 [HugePedia]
snp3D : Map Gene to Disease4665
BioCentury BCIQNAB2
ClinGenNAB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4665
Chemical/Pharm GKB GenePA31432
Clinical trialNAB2
Miscellaneous
canSAR (ICR)NAB2 (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNAB2
EVEXNAB2
GoPubMedNAB2
iHOPNAB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:46:01 CEST 2017
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