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NABP2 (nucleic acid binding protein 2)

Identity

Alias_namesOBFC2B
oligonucleotide/oligosaccharide-binding fold containing 2B
Alias_symbol (synonym)MGC2731
SSB1
hSSB1
SOSS-B1
Other alias
HGNC (Hugo) NABP2
LocusID (NCBI) 79035
Atlas_Id 50299
Location 12q13.3  [Link to chromosome band 12q13]
Location_base_pair Starts at 56224341 and ends at 56229854 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COQ10A (12q13.3) / NABP2 (12q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NABP2   28412
Cards
Entrez_Gene (NCBI)NABP2  79035  nucleic acid binding protein 2
AliasesOBFC2B; SOSS-B1; SSB1; hSSB1
GeneCards (Weizmann)NABP2
Ensembl hg19 (Hinxton)ENSG00000139579 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139579 [Gene_View]  chr12:56224341-56229854 [Contig_View]  NABP2 [Vega]
ICGC DataPortalENSG00000139579
TCGA cBioPortalNABP2
AceView (NCBI)NABP2
Genatlas (Paris)NABP2
WikiGenes79035
SOURCE (Princeton)NABP2
Genetics Home Reference (NIH)NABP2
Genomic and cartography
GoldenPath hg38 (UCSC)NABP2  -     chr12:56224341-56229854 +  12q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NABP2  -     12q13.3   [Description]    (hg19-Feb_2009)
EnsemblNABP2 - 12q13.3 [CytoView hg19]  NABP2 - 12q13.3 [CytoView hg38]
Mapping of homologs : NCBINABP2 [Mapview hg19]  NABP2 [Mapview hg38]
OMIM612104   
Gene and transcription
Genbank (Entrez)AI038029 AY203942 BC001079 BC006171 BG697807
RefSeq transcript (Entrez)NM_024068
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NABP2
Cluster EST : UnigeneHs.240170 [ NCBI ]
CGAP (NCI)Hs.240170
Alternative Splicing GalleryENSG00000139579
Gene ExpressionNABP2 [ NCBI-GEO ]   NABP2 [ EBI - ARRAY_EXPRESS ]   NABP2 [ SEEK ]   NABP2 [ MEM ]
Gene Expression Viewer (FireBrowse)NABP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79035
GTEX Portal (Tissue expression)NABP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQ15   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQ15  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQ15
Splice isoforms : SwissVarQ9BQ15
PhosPhoSitePlusQ9BQ15
Domains : Interpro (EBI)NA-bd_OB-fold    NA-bd_OB_tRNA   
Domain families : Pfam (Sanger)tRNA_anti-codon (PF01336)   
Domain families : Pfam (NCBI)pfam01336   
Conserved Domain (NCBI)NABP2
DMDM Disease mutations79035
Blocks (Seattle)NABP2
PDB (SRS)4OWT    4OWW    4OWX    5D8E    5D8F   
PDB (PDBSum)4OWT    4OWW    4OWX    5D8E    5D8F   
PDB (IMB)4OWT    4OWW    4OWX    5D8E    5D8F   
PDB (RSDB)4OWT    4OWW    4OWX    5D8E    5D8F   
Structural Biology KnowledgeBase4OWT    4OWW    4OWX    5D8E    5D8F   
SCOP (Structural Classification of Proteins)4OWT    4OWW    4OWX    5D8E    5D8F   
CATH (Classification of proteins structures)4OWT    4OWW    4OWX    5D8E    5D8F   
SuperfamilyQ9BQ15
Human Protein AtlasENSG00000139579
Peptide AtlasQ9BQ15
HPRD14522
IPIIPI00031633   IPI00893801   IPI00894509   IPI00894387   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQ15
IntAct (EBI)Q9BQ15
FunCoupENSG00000139579
BioGRIDNABP2
STRING (EMBL)NABP2
ZODIACNABP2
Ontologies - Pathways
QuickGOQ9BQ15
Ontology : AmiGOdouble-strand break repair via homologous recombination  nuclear chromosome, telomeric region  single-stranded DNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytosol  DNA repair  DNA repair  cellular response to DNA damage stimulus  mitotic cell cycle checkpoint  response to ionizing radiation  snRNA transcription from RNA polymerase II promoter  regulation of telomerase activity  C-rich strand telomeric DNA binding  DNA polymerase binding  establishment of protein localization to telomere  SOSS complex  G-rich strand telomeric DNA binding  positive regulation of telomere capping  
Ontology : EGO-EBIdouble-strand break repair via homologous recombination  nuclear chromosome, telomeric region  single-stranded DNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytosol  DNA repair  DNA repair  cellular response to DNA damage stimulus  mitotic cell cycle checkpoint  response to ionizing radiation  snRNA transcription from RNA polymerase II promoter  regulation of telomerase activity  C-rich strand telomeric DNA binding  DNA polymerase binding  establishment of protein localization to telomere  SOSS complex  G-rich strand telomeric DNA binding  positive regulation of telomere capping  
NDEx NetworkNABP2
Atlas of Cancer Signalling NetworkNABP2
Wikipedia pathwaysNABP2
Orthology - Evolution
OrthoDB79035
GeneTree (enSembl)ENSG00000139579
Phylogenetic Trees/Animal Genes : TreeFamNABP2
HOVERGENQ9BQ15
HOGENOMQ9BQ15
Homologs : HomoloGeneNABP2
Homology/Alignments : Family Browser (UCSC)NABP2
Gene fusions - Rearrangements
Fusion : MitelmanCOQ10A/NABP2 [12q13.3/12q13.3]  [t(12;12)(q13;q13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNABP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NABP2
dbVarNABP2
ClinVarNABP2
1000_GenomesNABP2 
Exome Variant ServerNABP2
ExAC (Exome Aggregation Consortium)NABP2 (select the gene name)
Genetic variants : HAPMAP79035
Genomic Variants (DGV)NABP2 [DGVbeta]
DECIPHERNABP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNABP2 
Mutations
ICGC Data PortalNABP2 
TCGA Data PortalNABP2 
Broad Tumor PortalNABP2
OASIS PortalNABP2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNABP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NABP2
DgiDB (Drug Gene Interaction Database)NABP2
DoCM (Curated mutations)NABP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NABP2 (select a term)
intoGenNABP2
Cancer3DNABP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612104   
Orphanet
MedgenNABP2
Genetic Testing Registry NABP2
NextProtQ9BQ15 [Medical]
TSGene79035
GENETestsNABP2
Target ValidationNABP2
Huge Navigator NABP2 [HugePedia]
snp3D : Map Gene to Disease79035
BioCentury BCIQNABP2
ClinGenNABP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79035
Chemical/Pharm GKB GenePA143485567
Clinical trialNABP2
Miscellaneous
canSAR (ICR)NABP2 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNABP2
EVEXNABP2
GoPubMedNABP2
iHOPNABP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 14:01:05 CEST 2017

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