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NACAP1 (nascent polypeptide associated complex alpha subunit pseudogene 1)

Identity

Alias_namesnascent-polypeptide-associated complex alpha polypeptide pseudogene 1
Alias_symbol (synonym)FKSG17
Other alias
HGNC (Hugo) NACAP1
LocusID (NCBI) 83955
Atlas_Id 54486
Location 8q22.3  [Link to chromosome band 8q22]
Location_base_pair Starts at 101368772 and ends at 101370063 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GSE1 (16q24.1) / NACAP1 (8q22.3)NACA (12q13.3) / NACAP1 (8q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)NACAP1   24688
Cards
Entrez_Gene (NCBI)NACAP1  83955  nascent polypeptide associated complex alpha subunit pseudogene 1
AliasesFKSG17
GeneCards (Weizmann)NACAP1
Ensembl hg19 (Hinxton)ENSG00000228224 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228224 [Gene_View]  chr8:101368772-101370063 [Contig_View]  NACAP1 [Vega]
ICGC DataPortalENSG00000228224
TCGA cBioPortalNACAP1
AceView (NCBI)NACAP1
Genatlas (Paris)NACAP1
WikiGenes83955
SOURCE (Princeton)NACAP1
Genetics Home Reference (NIH)NACAP1
Genomic and cartography
GoldenPath hg38 (UCSC)NACAP1  -     chr8:101368772-101370063 +  8q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NACAP1  -     8q22.3   [Description]    (hg19-Feb_2009)
EnsemblNACAP1 - 8q22.3 [CytoView hg19]  NACAP1 - 8q22.3 [CytoView hg38]
Mapping of homologs : NCBINACAP1 [Mapview hg19]  NACAP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF315951 AK291701 BC069062 BC069411 BC069542
RefSeq transcript (Entrez)NM_032031
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NACAP1
Cluster EST : UnigeneHs.567608 [ NCBI ]
CGAP (NCI)Hs.567608
Alternative Splicing GalleryENSG00000228224
Gene ExpressionNACAP1 [ NCBI-GEO ]   NACAP1 [ EBI - ARRAY_EXPRESS ]   NACAP1 [ SEEK ]   NACAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)NACAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83955
GTEX Portal (Tissue expression)NACAP1
Human Protein AtlasENSG00000228224-NACAP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZK3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZK3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZK3
Splice isoforms : SwissVarQ9BZK3
PhosPhoSitePlusQ9BZK3
Domaine pattern : Prosite (Expaxy)NAC_AB (PS51151)   
Domains : Interpro (EBI)EGD2/NACA    Nas_poly-pep-assoc_cplx_dom   
Domain families : Pfam (Sanger)NAC (PF01849)   
Domain families : Pfam (NCBI)pfam01849   
Domain families : Smart (EMBL)NAC (SM01407)  
Conserved Domain (NCBI)NACAP1
DMDM Disease mutations83955
Blocks (Seattle)NACAP1
SuperfamilyQ9BZK3
Human Protein Atlas [tissue]ENSG00000228224-NACAP1 [tissue]
Peptide AtlasQ9BZK3
IPIIPI00012479   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZK3
IntAct (EBI)Q9BZK3
FunCoupENSG00000228224
BioGRIDNACAP1
STRING (EMBL)NACAP1
ZODIACNACAP1
Ontologies - Pathways
QuickGOQ9BZK3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkNACAP1
Atlas of Cancer Signalling NetworkNACAP1
Wikipedia pathwaysNACAP1
Orthology - Evolution
OrthoDB83955
GeneTree (enSembl)ENSG00000228224
Phylogenetic Trees/Animal Genes : TreeFamNACAP1
HOVERGENQ9BZK3
HOGENOMQ9BZK3
Homologs : HomoloGeneNACAP1
Homology/Alignments : Family Browser (UCSC)NACAP1
Gene fusions - Rearrangements
Fusion : MitelmanGSE1/NACAP1 [16q24.1/8q22.3]  [t(8;16)(q22;q24)]  
Tumor Fusion PortalNACAP1
Fusion Cancer (Beijing)NACA [12q13.3]  -  NACAP1 [8q22.3]  [FUSC004209]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNACAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NACAP1
dbVarNACAP1
ClinVarNACAP1
1000_GenomesNACAP1 
Exome Variant ServerNACAP1
ExAC (Exome Aggregation Consortium)ENSG00000228224
GNOMAD BrowserENSG00000228224
Genetic variants : HAPMAP83955
Genomic Variants (DGV)NACAP1 [DGVbeta]
DECIPHERNACAP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNACAP1 
Mutations
ICGC Data PortalNACAP1 
TCGA Data PortalNACAP1 
Broad Tumor PortalNACAP1
OASIS PortalNACAP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNACAP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NACAP1
DgiDB (Drug Gene Interaction Database)NACAP1
DoCM (Curated mutations)NACAP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NACAP1 (select a term)
intoGenNACAP1
Cancer3DNACAP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNACAP1
MedgenNACAP1
Genetic Testing Registry NACAP1
NextProtQ9BZK3 [Medical]
TSGene83955
GENETestsNACAP1
Target ValidationNACAP1
Huge Navigator NACAP1 [HugePedia]
snp3D : Map Gene to Disease83955
BioCentury BCIQNACAP1
ClinGenNACAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83955
Chemical/Pharm GKB GenePA142671297
Clinical trialNACAP1
Miscellaneous
canSAR (ICR)NACAP1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNACAP1
EVEXNACAP1
GoPubMedNACAP1
iHOPNACAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:25:27 CET 2017

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