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NAF1 (nuclear assembly factor 1 ribonucleoprotein)

Identity

Alias_namesnuclear assembly factor 1 homolog (S. cerevisiae)
Other alias-
HGNC (Hugo) NAF1
LocusID (NCBI) 92345
Atlas_Id 54034
Location 4q32.2  [Link to chromosome band 4q32]
Location_base_pair Starts at 164047860 and ends at 164088073 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
UNK (17q25.1) / NAF1 (4q32.2)UNK 17q25.1 / NAF1 4q32.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NAF1   25126
Cards
Entrez_Gene (NCBI)NAF1  92345  nuclear assembly factor 1 ribonucleoprotein
Aliases
GeneCards (Weizmann)NAF1
Ensembl hg19 (Hinxton)ENSG00000145414 [Gene_View]  chr4:164047860-164088073 [Contig_View]  NAF1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000145414 [Gene_View]  chr4:164047860-164088073 [Contig_View]  NAF1 [Vega]
ICGC DataPortalENSG00000145414
TCGA cBioPortalNAF1
AceView (NCBI)NAF1
Genatlas (Paris)NAF1
WikiGenes92345
SOURCE (Princeton)NAF1
Genetics Home Reference (NIH)NAF1
Genomic and cartography
GoldenPath hg19 (UCSC)NAF1  -     chr4:164047860-164088073 -  4q32.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NAF1  -     4q32.2   [Description]    (hg38-Dec_2013)
EnsemblNAF1 - 4q32.2 [CytoView hg19]  NAF1 - 4q32.2 [CytoView hg38]
Mapping of homologs : NCBINAF1 [Mapview hg19]  NAF1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097352 AK126037 AK308601 BC008207
RefSeq transcript (Entrez)NM_001128931 NM_138386
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)NAF1
Cluster EST : UnigeneHs.733548 [ NCBI ]
CGAP (NCI)Hs.733548
Alternative Splicing GalleryENSG00000145414
Gene ExpressionNAF1 [ NCBI-GEO ]   NAF1 [ EBI - ARRAY_EXPRESS ]   NAF1 [ SEEK ]   NAF1 [ MEM ]
Gene Expression Viewer (FireBrowse)NAF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92345
GTEX Portal (Tissue expression)NAF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HR8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HR8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HR8
Splice isoforms : SwissVarQ96HR8
PhosPhoSitePlusQ96HR8
Domains : Interpro (EBI)H/ACA_rnp_Gar1/Naf1    Transl_B-barrel   
Domain families : Pfam (Sanger)Gar1 (PF04410)   
Domain families : Pfam (NCBI)pfam04410   
Conserved Domain (NCBI)NAF1
DMDM Disease mutations92345
Blocks (Seattle)NAF1
PDB (SRS)2EQN   
PDB (PDBSum)2EQN   
PDB (IMB)2EQN   
PDB (RSDB)2EQN   
Structural Biology KnowledgeBase2EQN   
SCOP (Structural Classification of Proteins)2EQN   
CATH (Classification of proteins structures)2EQN   
SuperfamilyQ96HR8
Human Protein AtlasENSG00000145414
Peptide AtlasQ96HR8
HPRD10054
IPIIPI00063219   IPI00900361   IPI00964792   
Protein Interaction databases
DIP (DOE-UCLA)Q96HR8
IntAct (EBI)Q96HR8
FunCoupENSG00000145414
BioGRIDNAF1
STRING (EMBL)NAF1
ZODIACNAF1
Ontologies - Pathways
QuickGOQ96HR8
Ontology : AmiGOpseudouridine synthesis  RNA binding  protein binding  nucleus  small nucleolar ribonucleoprotein complex  cytoplasm  rRNA processing  ribosome biogenesis  poly(A) RNA binding  telomerase RNA binding  positive regulation of telomerase RNA localization to Cajal body  
Ontology : EGO-EBIpseudouridine synthesis  RNA binding  protein binding  nucleus  small nucleolar ribonucleoprotein complex  cytoplasm  rRNA processing  ribosome biogenesis  poly(A) RNA binding  telomerase RNA binding  positive regulation of telomerase RNA localization to Cajal body  
NDEx NetworkNAF1
Atlas of Cancer Signalling NetworkNAF1
Wikipedia pathwaysNAF1
Orthology - Evolution
OrthoDB92345
GeneTree (enSembl)ENSG00000145414
Phylogenetic Trees/Animal Genes : TreeFamNAF1
HOVERGENQ96HR8
HOGENOMQ96HR8
Homologs : HomoloGeneNAF1
Homology/Alignments : Family Browser (UCSC)NAF1
Gene fusions - Rearrangements
Fusion : MitelmanUNK/NAF1 [17q25.1/4q32.2]  [t(4;17)(q32;q25)]  
Fusion: TCGAUNK 17q25.1 NAF1 4q32.2 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNAF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NAF1
dbVarNAF1
ClinVarNAF1
1000_GenomesNAF1 
Exome Variant ServerNAF1
ExAC (Exome Aggregation Consortium)NAF1 (select the gene name)
Genetic variants : HAPMAP92345
Genomic Variants (DGV)NAF1 [DGVbeta]
DECIPHER (Syndromes)4:164047860-164088073  ENSG00000145414
CONAN: Copy Number AnalysisNAF1 
Mutations
ICGC Data PortalNAF1 
TCGA Data PortalNAF1 
Broad Tumor PortalNAF1
OASIS PortalNAF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNAF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNAF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NAF1
DgiDB (Drug Gene Interaction Database)NAF1
DoCM (Curated mutations)NAF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NAF1 (select a term)
intoGenNAF1
Cancer3DNAF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNAF1
Genetic Testing Registry NAF1
NextProtQ96HR8 [Medical]
TSGene92345
GENETestsNAF1
Huge Navigator NAF1 [HugePedia]
snp3D : Map Gene to Disease92345
BioCentury BCIQNAF1
ClinGenNAF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92345
Chemical/Pharm GKB GenePA162396775
Clinical trialNAF1
Miscellaneous
canSAR (ICR)NAF1 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNAF1
EVEXNAF1
GoPubMedNAF1
iHOPNAF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:18:04 CET 2017

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