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NAGA (alpha-N-acetylgalactosaminidase)

Identity

Alias_namesN-acetylgalactosaminidase
Alias_symbol (synonym)D22S674
Other aliasGALB
HGNC (Hugo) NAGA
LocusID (NCBI) 4668
Atlas_Id 43833
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 42058334 and ends at 42070842 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NAGA (22q13.2) / WBP2NL (22q13.2)NAGA 22q13.2 / WBP2NL 22q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NAGA   7631
Cards
Entrez_Gene (NCBI)NAGA  4668  alpha-N-acetylgalactosaminidase
AliasesD22S674; GALB
GeneCards (Weizmann)NAGA
Ensembl hg19 (Hinxton)ENSG00000198951 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198951 [Gene_View]  chr22:42058334-42070842 [Contig_View]  NAGA [Vega]
ICGC DataPortalENSG00000198951
TCGA cBioPortalNAGA
AceView (NCBI)NAGA
Genatlas (Paris)NAGA
WikiGenes4668
SOURCE (Princeton)NAGA
Genetics Home Reference (NIH)NAGA
Genomic and cartography
GoldenPath hg38 (UCSC)NAGA  -     chr22:42058334-42070842 -  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NAGA  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblNAGA - 22q13.2 [CytoView hg19]  NAGA - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBINAGA [Mapview hg19]  NAGA [Mapview hg38]
OMIM104170   609241   609242   
Gene and transcription
Genbank (Entrez)BC000095 BE734247 CB988165 CR456527 CU013127
RefSeq transcript (Entrez)NM_000262
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NAGA
Cluster EST : UnigeneHs.75372 [ NCBI ]
CGAP (NCI)Hs.75372
Alternative Splicing GalleryENSG00000198951
Gene ExpressionNAGA [ NCBI-GEO ]   NAGA [ EBI - ARRAY_EXPRESS ]   NAGA [ SEEK ]   NAGA [ MEM ]
Gene Expression Viewer (FireBrowse)NAGA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4668
GTEX Portal (Tissue expression)NAGA
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17050   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17050  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17050
Splice isoforms : SwissVarP17050
Catalytic activity : Enzyme3.2.1.49 [ Enzyme-Expasy ]   3.2.1.493.2.1.49 [ IntEnz-EBI ]   3.2.1.49 [ BRENDA ]   3.2.1.49 [ KEGG ]   
PhosPhoSitePlusP17050
Domaine pattern : Prosite (Expaxy)ALPHA_GALACTOSIDASE (PS00512)   
Domains : Interpro (EBI)Aldolase_TIM    Glyco_hydro_27    Glyco_hydro_27/36_CS    Glyco_hydro_b    Glycoside_hydrolase_SF   
Domain families : Pfam (Sanger)Melibiase_2 (PF16499)   
Domain families : Pfam (NCBI)pfam16499   
Conserved Domain (NCBI)NAGA
DMDM Disease mutations4668
Blocks (Seattle)NAGA
PDB (SRS)3H53    3H54    3H55    3IGU    4DO4    4DO5    4DO6   
PDB (PDBSum)3H53    3H54    3H55    3IGU    4DO4    4DO5    4DO6   
PDB (IMB)3H53    3H54    3H55    3IGU    4DO4    4DO5    4DO6   
PDB (RSDB)3H53    3H54    3H55    3IGU    4DO4    4DO5    4DO6   
Structural Biology KnowledgeBase3H53    3H54    3H55    3IGU    4DO4    4DO5    4DO6   
SCOP (Structural Classification of Proteins)3H53    3H54    3H55    3IGU    4DO4    4DO5    4DO6   
CATH (Classification of proteins structures)3H53    3H54    3H55    3IGU    4DO4    4DO5    4DO6   
SuperfamilyP17050
Human Protein AtlasENSG00000198951
Peptide AtlasP17050
HPRD00076
IPIIPI00414909   IPI00917374   IPI00917198   
Protein Interaction databases
DIP (DOE-UCLA)P17050
IntAct (EBI)P17050
FunCoupENSG00000198951
BioGRIDNAGA
STRING (EMBL)NAGA
ZODIACNAGA
Ontologies - Pathways
QuickGOP17050
Ontology : AmiGOalpha-galactosidase activity  cytoplasm  lysosome  alpha-N-acetylgalactosaminidase activity  carbohydrate catabolic process  glycoside catabolic process  glycolipid catabolic process  protein homodimerization activity  extracellular exosome  
Ontology : EGO-EBIalpha-galactosidase activity  cytoplasm  lysosome  alpha-N-acetylgalactosaminidase activity  carbohydrate catabolic process  glycoside catabolic process  glycolipid catabolic process  protein homodimerization activity  extracellular exosome  
Pathways : KEGGGlycosphingolipid biosynthesis - globo series    Lysosome   
NDEx NetworkNAGA
Atlas of Cancer Signalling NetworkNAGA
Wikipedia pathwaysNAGA
Orthology - Evolution
OrthoDB4668
GeneTree (enSembl)ENSG00000198951
Phylogenetic Trees/Animal Genes : TreeFamNAGA
HOVERGENP17050
HOGENOMP17050
Homologs : HomoloGeneNAGA
Homology/Alignments : Family Browser (UCSC)NAGA
Gene fusions - Rearrangements
Fusion : MitelmanNAGA/WBP2NL [22q13.2/22q13.2]  
Fusion: TCGANAGA 22q13.2 WBP2NL 22q13.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNAGA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NAGA
dbVarNAGA
ClinVarNAGA
1000_GenomesNAGA 
Exome Variant ServerNAGA
ExAC (Exome Aggregation Consortium)NAGA (select the gene name)
Genetic variants : HAPMAP4668
Genomic Variants (DGV)NAGA [DGVbeta]
DECIPHERNAGA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNAGA 
Mutations
ICGC Data PortalNAGA 
TCGA Data PortalNAGA 
Broad Tumor PortalNAGA
OASIS PortalNAGA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNAGA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNAGA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NAGA
DgiDB (Drug Gene Interaction Database)NAGA
DoCM (Curated mutations)NAGA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NAGA (select a term)
intoGenNAGA
Cancer3DNAGA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM104170    609241    609242   
Orphanet11305    11306    11307   
MedgenNAGA
Genetic Testing Registry NAGA
NextProtP17050 [Medical]
TSGene4668
GENETestsNAGA
Target ValidationNAGA
Huge Navigator NAGA [HugePedia]
snp3D : Map Gene to Disease4668
BioCentury BCIQNAGA
ClinGenNAGA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4668
Chemical/Pharm GKB GenePA31435
Clinical trialNAGA
Miscellaneous
canSAR (ICR)NAGA (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNAGA
EVEXNAGA
GoPubMedNAGA
iHOPNAGA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:46:03 CEST 2017

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