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NAGPA (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase)

Identity

Alias_symbol (synonym)APAA
UCE
Other alias
HGNC (Hugo) NAGPA
LocusID (NCBI) 51172
Atlas_Id 70675
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 5024844 and ends at 5033941 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NAGPA   17378
Cards
Entrez_Gene (NCBI)NAGPA  51172  N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
AliasesAPAA; UCE
GeneCards (Weizmann)NAGPA
Ensembl hg19 (Hinxton)ENSG00000103174 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103174 [Gene_View]  chr16:5024844-5033941 [Contig_View]  NAGPA [Vega]
ICGC DataPortalENSG00000103174
TCGA cBioPortalNAGPA
AceView (NCBI)NAGPA
Genatlas (Paris)NAGPA
WikiGenes51172
SOURCE (Princeton)NAGPA
Genetics Home Reference (NIH)NAGPA
Genomic and cartography
GoldenPath hg38 (UCSC)NAGPA  -     chr16:5024844-5033941 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NAGPA  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblNAGPA - 16p13.3 [CytoView hg19]  NAGPA - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBINAGPA [Mapview hg19]  NAGPA [Mapview hg38]
OMIM607985   
Gene and transcription
Genbank (Entrez)AF052111 AF187072 AK025570 AK026122 AK092889
RefSeq transcript (Entrez)NM_016256
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NAGPA
Cluster EST : UnigeneHs.21334 [ NCBI ]
CGAP (NCI)Hs.21334
Alternative Splicing GalleryENSG00000103174
Gene ExpressionNAGPA [ NCBI-GEO ]   NAGPA [ EBI - ARRAY_EXPRESS ]   NAGPA [ SEEK ]   NAGPA [ MEM ]
Gene Expression Viewer (FireBrowse)NAGPA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51172
GTEX Portal (Tissue expression)NAGPA
Human Protein AtlasENSG00000103174-NAGPA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK23   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK23  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK23
Splice isoforms : SwissVarQ9UK23
Catalytic activity : Enzyme3.1.4.45 [ Enzyme-Expasy ]   3.1.4.453.1.4.45 [ IntEnz-EBI ]   3.1.4.45 [ BRENDA ]   3.1.4.45 [ KEGG ]   
PhosPhoSitePlusQ9UK23
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)   
Domains : Interpro (EBI)EGF-like_CS    EGF-like_dom    NAGPA   
Domain families : Pfam (Sanger)NAGPA (PF09992)   
Domain families : Pfam (NCBI)pfam09992   
Conserved Domain (NCBI)NAGPA
DMDM Disease mutations51172
Blocks (Seattle)NAGPA
SuperfamilyQ9UK23
Human Protein Atlas [tissue]ENSG00000103174-NAGPA [tissue]
Peptide AtlasQ9UK23
HPRD12145
IPIIPI00008303   IPI00513704   IPI00513953   
Protein Interaction databases
DIP (DOE-UCLA)Q9UK23
IntAct (EBI)Q9UK23
FunCoupENSG00000103174
BioGRIDNAGPA
STRING (EMBL)NAGPA
ZODIACNAGPA
Ontologies - Pathways
QuickGOQ9UK23
Ontology : AmiGON-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase activity  protein binding  carbohydrate metabolic process  cellular protein modification process  protein glycosylation  protein targeting to lysosome  lysosome organization  integral component of membrane  Golgi cisterna membrane  secretion of lysosomal enzymes  
Ontology : EGO-EBIN-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase activ)ty&obsp; protein binding  carbohydrate metabolic process  cellular protein modification process  protein glycosylation  protein targeting to lysosome  lysosome organization  integral component of membrane  Golgi cisterna membrane  secretion of lysosomal enzymes  
Pathways : KEGGLysosome   
NDEx NetworkNAGPA
Atlas of Cancer Signalling NetworkNAGPA
Wikipedia pathwaysNAGPA
Orthology - Evolution
OrthoDB51172
GeneTree (enSembl)ENSG00000103174
Phylogenetic Trees/Animal Genes : TreeFamNAGPA
HOVERGENQ9UK23
HOGENOMQ9UK23
Homologs : HomoloGeneNAGPA
Homology/Alignments : Family Browser (UCSC)NAGPA
Gene fusions - Rearrangements
Fusion: Tumor Portal NAGPA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNAGPA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NAGPA
dbVarNAGPA
ClinVarNAGPA
1000_GenomesNAGPA 
Exome Variant ServerNAGPA
ExAC (Exome Aggregation Consortium)ENSG00000103174
GNOMAD BrowserENSG00000103174
Genetic variants : HAPMAP51172
Genomic Variants (DGV)NAGPA [DGVbeta]
DECIPHERNAGPA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNAGPA 
Mutations
ICGC Data PortalNAGPA 
TCGA Data PortalNAGPA 
Broad Tumor PortalNAGPA
OASIS PortalNAGPA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNAGPA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNAGPA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NAGPA
DgiDB (Drug Gene Interaction Database)NAGPA
DoCM (Curated mutations)NAGPA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NAGPA (select a term)
intoGenNAGPA
Cancer3DNAGPA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607985   
Orphanet
MedgenNAGPA
Genetic Testing Registry NAGPA
NextProtQ9UK23 [Medical]
TSGene51172
GENETestsNAGPA
Target ValidationNAGPA
Huge Navigator NAGPA [HugePedia]
snp3D : Map Gene to Disease51172
BioCentury BCIQNAGPA
ClinGenNAGPA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51172
Chemical/Pharm GKB GenePA134940049
Clinical trialNAGPA
Miscellaneous
canSAR (ICR)NAGPA (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNAGPA
EVEXNAGPA
GoPubMedNAGPA
iHOPNAGPA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:18:31 CET 2017

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