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NAIF1 (nuclear apoptosis inducing factor 1)

Identity

Alias_namesC9orf90
chromosome 9 open reading frame 90
Alias_symbol (synonym)DKFZp762G199
bA379C10.2
Other alias
HGNC (Hugo) NAIF1
LocusID (NCBI) 203245
Atlas_Id 52344
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 130823512 and ends at 130829599 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM102A (9q34.11) / NAIF1 (9q34.11)FAM102A 9q34.11 / NAIF1 9q34.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NAIF1   25446
Cards
Entrez_Gene (NCBI)NAIF1  203245  nuclear apoptosis inducing factor 1
AliasesC9orf90; bA379C10.2
GeneCards (Weizmann)NAIF1
Ensembl hg19 (Hinxton)ENSG00000171169 [Gene_View]  chr9:130823512-130829599 [Contig_View]  NAIF1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171169 [Gene_View]  chr9:130823512-130829599 [Contig_View]  NAIF1 [Vega]
ICGC DataPortalENSG00000171169
TCGA cBioPortalNAIF1
AceView (NCBI)NAIF1
Genatlas (Paris)NAIF1
WikiGenes203245
SOURCE (Princeton)NAIF1
Genetics Home Reference (NIH)NAIF1
Genomic and cartography
GoldenPath hg19 (UCSC)NAIF1  -     chr9:130823512-130829599 -  9q34.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NAIF1  -     9q34.11   [Description]    (hg38-Dec_2013)
EnsemblNAIF1 - 9q34.11 [CytoView hg19]  NAIF1 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBINAIF1 [Mapview hg19]  NAIF1 [Mapview hg38]
OMIM610673   
Gene and transcription
Genbank (Entrez)AI864878 AK122729 AL833392 BC013371 BC021580
RefSeq transcript (Entrez)NM_197956
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)NAIF1
Cluster EST : UnigeneHs.740682 [ NCBI ]
CGAP (NCI)Hs.740682
Alternative Splicing GalleryENSG00000171169
Gene ExpressionNAIF1 [ NCBI-GEO ]   NAIF1 [ EBI - ARRAY_EXPRESS ]   NAIF1 [ SEEK ]   NAIF1 [ MEM ]
Gene Expression Viewer (FireBrowse)NAIF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203245
GTEX Portal (Tissue expression)NAIF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ69YI7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ69YI7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ69YI7
Splice isoforms : SwissVarQ69YI7
PhosPhoSitePlusQ69YI7
Domains : Interpro (EBI)Myb_DNA-bind_5    NAIF1   
Domain families : Pfam (Sanger)Myb_DNA-bind_5 (PF13873)   
Domain families : Pfam (NCBI)pfam13873   
Conserved Domain (NCBI)NAIF1
DMDM Disease mutations203245
Blocks (Seattle)NAIF1
SuperfamilyQ69YI7
Human Protein AtlasENSG00000171169
Peptide AtlasQ69YI7
HPRD12987
IPIIPI00146329   IPI00607823   
Protein Interaction databases
DIP (DOE-UCLA)Q69YI7
IntAct (EBI)Q69YI7
FunCoupENSG00000171169
BioGRIDNAIF1
STRING (EMBL)NAIF1
ZODIACNAIF1
Ontologies - Pathways
QuickGOQ69YI7
Ontology : AmiGOmolecular_function  protein binding  nucleus  nucleoplasm  mitochondrion  plasma membrane  negative regulation of cell growth  regulation of mitochondrial membrane permeability involved in apoptotic process  
Ontology : EGO-EBImolecular_function  protein binding  nucleus  nucleoplasm  mitochondrion  plasma membrane  negative regulation of cell growth  regulation of mitochondrial membrane permeability involved in apoptotic process  
NDEx NetworkNAIF1
Atlas of Cancer Signalling NetworkNAIF1
Wikipedia pathwaysNAIF1
Orthology - Evolution
OrthoDB203245
GeneTree (enSembl)ENSG00000171169
Phylogenetic Trees/Animal Genes : TreeFamNAIF1
HOVERGENQ69YI7
HOGENOMQ69YI7
Homologs : HomoloGeneNAIF1
Homology/Alignments : Family Browser (UCSC)NAIF1
Gene fusions - Rearrangements
Fusion : MitelmanFAM102A/NAIF1 [9q34.11/9q34.11]  [t(9;9)(q34;q34)]  
Fusion: TCGAFAM102A 9q34.11 NAIF1 9q34.11 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNAIF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NAIF1
dbVarNAIF1
ClinVarNAIF1
1000_GenomesNAIF1 
Exome Variant ServerNAIF1
ExAC (Exome Aggregation Consortium)NAIF1 (select the gene name)
Genetic variants : HAPMAP203245
Genomic Variants (DGV)NAIF1 [DGVbeta]
DECIPHER (Syndromes)9:130823512-130829599  ENSG00000171169
CONAN: Copy Number AnalysisNAIF1 
Mutations
ICGC Data PortalNAIF1 
TCGA Data PortalNAIF1 
Broad Tumor PortalNAIF1
OASIS PortalNAIF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNAIF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNAIF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NAIF1
DgiDB (Drug Gene Interaction Database)NAIF1
DoCM (Curated mutations)NAIF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NAIF1 (select a term)
intoGenNAIF1
Cancer3DNAIF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610673   
Orphanet
MedgenNAIF1
Genetic Testing Registry NAIF1
NextProtQ69YI7 [Medical]
TSGene203245
GENETestsNAIF1
Huge Navigator NAIF1 [HugePedia]
snp3D : Map Gene to Disease203245
BioCentury BCIQNAIF1
ClinGenNAIF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD203245
Chemical/Pharm GKB GenePA162396796
Clinical trialNAIF1
Miscellaneous
canSAR (ICR)NAIF1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNAIF1
EVEXNAIF1
GoPubMedNAIF1
iHOPNAIF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:11:37 CEST 2017

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