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NALT1 (NOTCH1 associated lncRNA in T-cell acute lymphoblastic leukemia 1)

Identity

Alias_namesMIR4674HG
LINC01573
MIR4674 host gene (non-protein coding)
long intergenic non-protein coding RNA 1573
NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1
Alias_symbol (synonym)TCONS_l2_00029132
Other aliasNALT
HGNC (Hugo) NALT1
LocusID (NCBI) 101928483
Atlas_Id 55446
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 136547842 and ends at 136549744 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NALT1   51192
Cards
Entrez_Gene (NCBI)NALT1  101928483  NOTCH1 associated lncRNA in T-cell acute lymphoblastic leukemia 1
AliasesLINC01573; MIR4674HG; NALT
GeneCards (Weizmann)NALT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:136547842-136549744 [Contig_View]  NALT1 [Vega]
TCGA cBioPortalNALT1
AceView (NCBI)NALT1
Genatlas (Paris)NALT1
WikiGenes101928483
SOURCE (Princeton)NALT1
Genetics Home Reference (NIH)NALT1
Genomic and cartography
GoldenPath hg38 (UCSC)NALT1  -     chr9:136547842-136549744 +  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NALT1  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblNALT1 - 9q34.3 [CytoView hg19]  NALT1 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBINALT1 [Mapview hg19]  NALT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW449200 DA924831
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NALT1
Cluster EST : UnigeneHs.635171 [ NCBI ]
CGAP (NCI)Hs.635171
Gene ExpressionNALT1 [ NCBI-GEO ]   NALT1 [ EBI - ARRAY_EXPRESS ]   NALT1 [ SEEK ]   NALT1 [ MEM ]
Gene Expression Viewer (FireBrowse)NALT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928483
GTEX Portal (Tissue expression)NALT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NALT1
DMDM Disease mutations101928483
Blocks (Seattle)NALT1
Protein Interaction databases
BioGRIDNALT1
STRING (EMBL)NALT1
ZODIACNALT1
Ontologies - Pathways
Huge Navigator NALT1 [HugePedia]
snp3D : Map Gene to Disease101928483
BioCentury BCIQNALT1
ClinGenNALT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928483
Clinical trialNALT1
Miscellaneous
canSAR (ICR)NALT1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNALT1
EVEXNALT1
GoPubMedNALT1
iHOPNALT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:25:29 CET 2017

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