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NANOGNB (NANOG neighbor homeobox)

Identity

Other alias-
HGNC (Hugo) NANOGNB
LocusID (NCBI) 360030
Atlas_Id 70681
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 7765216 and ends at 7774121 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NANOGNB (12p13.31) / ATXN1 (6p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NANOGNB   24958
Cards
Entrez_Gene (NCBI)NANOGNB  360030  NANOG neighbor homeobox
Aliases
GeneCards (Weizmann)NANOGNB
Ensembl hg19 (Hinxton)ENSG00000205857 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205857 [Gene_View]  chr12:7765216-7774121 [Contig_View]  NANOGNB [Vega]
ICGC DataPortalENSG00000205857
TCGA cBioPortalNANOGNB
AceView (NCBI)NANOGNB
Genatlas (Paris)NANOGNB
WikiGenes360030
SOURCE (Princeton)NANOGNB
Genetics Home Reference (NIH)NANOGNB
Genomic and cartography
GoldenPath hg38 (UCSC)NANOGNB  -     chr12:7765216-7774121 +  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NANOGNB  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblNANOGNB - 12p13.31 [CytoView hg19]  NANOGNB - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBINANOGNB [Mapview hg19]  NANOGNB [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY151139
RefSeq transcript (Entrez)NM_001145465
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NANOGNB
Cluster EST : UnigeneHs.558004 [ NCBI ]
CGAP (NCI)Hs.558004
Alternative Splicing GalleryENSG00000205857
Gene ExpressionNANOGNB [ NCBI-GEO ]   NANOGNB [ EBI - ARRAY_EXPRESS ]   NANOGNB [ SEEK ]   NANOGNB [ MEM ]
Gene Expression Viewer (FireBrowse)NANOGNB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)360030
GTEX Portal (Tissue expression)NANOGNB
Human Protein AtlasENSG00000205857-NANOGNB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5D8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z5D8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z5D8
Splice isoforms : SwissVarQ7Z5D8
PhosPhoSitePlusQ7Z5D8
Domaine pattern : Prosite (Expaxy)HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_dom   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Conserved Domain (NCBI)NANOGNB
DMDM Disease mutations360030
Blocks (Seattle)NANOGNB
SuperfamilyQ7Z5D8
Human Protein Atlas [tissue]ENSG00000205857-NANOGNB [tissue]
Peptide AtlasQ7Z5D8
IPIIPI00376120   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5D8
IntAct (EBI)Q7Z5D8
FunCoupENSG00000205857
BioGRIDNANOGNB
STRING (EMBL)NANOGNB
ZODIACNANOGNB
Ontologies - Pathways
QuickGOQ7Z5D8
Ontology : AmiGODNA binding  nucleus  
Ontology : EGO-EBIDNA binding  nucleus  
NDEx NetworkNANOGNB
Atlas of Cancer Signalling NetworkNANOGNB
Wikipedia pathwaysNANOGNB
Orthology - Evolution
OrthoDB360030
GeneTree (enSembl)ENSG00000205857
Phylogenetic Trees/Animal Genes : TreeFamNANOGNB
HOVERGENQ7Z5D8
HOGENOMQ7Z5D8
Homologs : HomoloGeneNANOGNB
Homology/Alignments : Family Browser (UCSC)NANOGNB
Gene fusions - Rearrangements
Tumor Fusion PortalNANOGNB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNANOGNB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NANOGNB
dbVarNANOGNB
ClinVarNANOGNB
1000_GenomesNANOGNB 
Exome Variant ServerNANOGNB
ExAC (Exome Aggregation Consortium)ENSG00000205857
GNOMAD BrowserENSG00000205857
Genetic variants : HAPMAP360030
Genomic Variants (DGV)NANOGNB [DGVbeta]
DECIPHERNANOGNB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNANOGNB 
Mutations
ICGC Data PortalNANOGNB 
TCGA Data PortalNANOGNB 
Broad Tumor PortalNANOGNB
OASIS PortalNANOGNB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNANOGNB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNANOGNB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NANOGNB
DgiDB (Drug Gene Interaction Database)NANOGNB
DoCM (Curated mutations)NANOGNB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NANOGNB (select a term)
intoGenNANOGNB
Cancer3DNANOGNB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNANOGNB
MedgenNANOGNB
Genetic Testing Registry NANOGNB
NextProtQ7Z5D8 [Medical]
TSGene360030
GENETestsNANOGNB
Target ValidationNANOGNB
Huge Navigator NANOGNB [HugePedia]
snp3D : Map Gene to Disease360030
BioCentury BCIQNANOGNB
ClinGenNANOGNB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD360030
Chemical/Pharm GKB GenePA165513123
Clinical trialNANOGNB
Miscellaneous
canSAR (ICR)NANOGNB (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNANOGNB
EVEXNANOGNB
GoPubMedNANOGNB
iHOPNANOGNB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:27:02 CET 2017

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