Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NANOGP1 (Nanog homeobox pseudogene 1)

Identity

Alias_symbol (synonym)NANOG2
Other alias
HGNC (Hugo) NANOGP1
LocusID (NCBI) 404635
Atlas_Id 70682
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 7872938 and ends at 7900078 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)NANOGP1   23099
Cards
Entrez_Gene (NCBI)NANOGP1  404635  Nanog homeobox pseudogene 1
AliasesNANOG2
GeneCards (Weizmann)NANOGP1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:7872938-7900078 [Contig_View]  NANOGP1 [Vega]
TCGA cBioPortalNANOGP1
AceView (NCBI)NANOGP1
Genatlas (Paris)NANOGP1
WikiGenes404635
SOURCE (Princeton)NANOGP1
Genetics Home Reference (NIH)NANOGP1
Genomic and cartography
GoldenPath hg38 (UCSC)NANOGP1  -     chr12:7872938-7900078 +  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NANOGP1  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblNANOGP1 - 12p13.31 [CytoView hg19]  NANOGP1 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBINANOGP1 [Mapview hg19]  NANOGP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097770 AY455283 KC713782
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NANOGP1
Cluster EST : UnigeneHs.635882 [ NCBI ]
CGAP (NCI)Hs.635882
Gene ExpressionNANOGP1 [ NCBI-GEO ]   NANOGP1 [ EBI - ARRAY_EXPRESS ]   NANOGP1 [ SEEK ]   NANOGP1 [ MEM ]
Gene Expression Viewer (FireBrowse)NANOGP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)404635
GTEX Portal (Tissue expression)NANOGP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7R0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7R0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7R0
Splice isoforms : SwissVarQ8N7R0
PhosPhoSitePlusQ8N7R0
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)NANOGP1
DMDM Disease mutations404635
Blocks (Seattle)NANOGP1
SuperfamilyQ8N7R0
Peptide AtlasQ8N7R0
IPIIPI00740989   IPI00978033   IPI00789450   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7R0
IntAct (EBI)Q8N7R0
BioGRIDNANOGP1
STRING (EMBL)NANOGP1
ZODIACNANOGP1
Ontologies - Pathways
QuickGOQ8N7R0
Ontology : AmiGOnucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  
Ontology : EGO-EBInucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  
NDEx NetworkNANOGP1
Atlas of Cancer Signalling NetworkNANOGP1
Wikipedia pathwaysNANOGP1
Orthology - Evolution
OrthoDB404635
Phylogenetic Trees/Animal Genes : TreeFamNANOGP1
HOVERGENQ8N7R0
HOGENOMQ8N7R0
Homologs : HomoloGeneNANOGP1
Homology/Alignments : Family Browser (UCSC)NANOGP1
Gene fusions - Rearrangements
Tumor Fusion PortalNANOGP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNANOGP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NANOGP1
dbVarNANOGP1
ClinVarNANOGP1
1000_GenomesNANOGP1 
Exome Variant ServerNANOGP1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP404635
Genomic Variants (DGV)NANOGP1 [DGVbeta]
DECIPHERNANOGP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNANOGP1 
Mutations
ICGC Data PortalNANOGP1 
TCGA Data PortalNANOGP1 
Broad Tumor PortalNANOGP1
OASIS PortalNANOGP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNANOGP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNANOGP1
BioMutasearch NANOGP1
DgiDB (Drug Gene Interaction Database)NANOGP1
DoCM (Curated mutations)NANOGP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NANOGP1 (select a term)
intoGenNANOGP1
Cancer3DNANOGP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNANOGP1
MedgenNANOGP1
Genetic Testing Registry NANOGP1
NextProtQ8N7R0 [Medical]
TSGene404635
GENETestsNANOGP1
Target ValidationNANOGP1
Huge Navigator NANOGP1 [HugePedia]
snp3D : Map Gene to Disease404635
BioCentury BCIQNANOGP1
ClinGenNANOGP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD404635
Chemical/Pharm GKB GenePA134899494
Clinical trialNANOGP1
Miscellaneous
canSAR (ICR)NANOGP1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNANOGP1
EVEXNANOGP1
GoPubMedNANOGP1
iHOPNANOGP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:27:02 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.