Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NANOGP1 (Nanog homeobox pseudogene 1)

Identity

Alias_symbol (synonym)NANOG2
Other alias
HGNC (Hugo) NANOGP1
LocusID (NCBI) 404635
Atlas_Id 70682
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 7872938 and ends at 7900078 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)NANOGP1   23099
Cards
Entrez_Gene (NCBI)NANOGP1  404635  Nanog homeobox pseudogene 1
AliasesNANOG2
GeneCards (Weizmann)NANOGP1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:7872938-7900078 [Contig_View]  NANOGP1 [Vega]
TCGA cBioPortalNANOGP1
AceView (NCBI)NANOGP1
Genatlas (Paris)NANOGP1
WikiGenes404635
SOURCE (Princeton)NANOGP1
Genetics Home Reference (NIH)NANOGP1
Genomic and cartography
GoldenPath hg38 (UCSC)NANOGP1  -     chr12:7872938-7900078 +  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NANOGP1  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblNANOGP1 - 12p13.31 [CytoView hg19]  NANOGP1 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBINANOGP1 [Mapview hg19]  NANOGP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097770 AY455283 KC713782
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NANOGP1
Cluster EST : UnigeneHs.635882 [ NCBI ]
CGAP (NCI)Hs.635882
Gene ExpressionNANOGP1 [ NCBI-GEO ]   NANOGP1 [ EBI - ARRAY_EXPRESS ]   NANOGP1 [ SEEK ]   NANOGP1 [ MEM ]
Gene Expression Viewer (FireBrowse)NANOGP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)404635
GTEX Portal (Tissue expression)NANOGP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7R0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7R0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7R0
Splice isoforms : SwissVarQ8N7R0
PhosPhoSitePlusQ8N7R0
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)NANOGP1
DMDM Disease mutations404635
Blocks (Seattle)NANOGP1
SuperfamilyQ8N7R0
Peptide AtlasQ8N7R0
IPIIPI00740989   IPI00978033   IPI00789450   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7R0
IntAct (EBI)Q8N7R0
BioGRIDNANOGP1
STRING (EMBL)NANOGP1
ZODIACNANOGP1
Ontologies - Pathways
QuickGOQ8N7R0
Ontology : AmiGOnucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  
Ontology : EGO-EBInucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  
NDEx NetworkNANOGP1
Atlas of Cancer Signalling NetworkNANOGP1
Wikipedia pathwaysNANOGP1
Orthology - Evolution
OrthoDB404635
Phylogenetic Trees/Animal Genes : TreeFamNANOGP1
HOVERGENQ8N7R0
HOGENOMQ8N7R0
Homologs : HomoloGeneNANOGP1
Homology/Alignments : Family Browser (UCSC)NANOGP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNANOGP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NANOGP1
dbVarNANOGP1
ClinVarNANOGP1
1000_GenomesNANOGP1 
Exome Variant ServerNANOGP1
ExAC (Exome Aggregation Consortium)NANOGP1 (select the gene name)
Genetic variants : HAPMAP404635
Genomic Variants (DGV)NANOGP1 [DGVbeta]
DECIPHERNANOGP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNANOGP1 
Mutations
ICGC Data PortalNANOGP1 
TCGA Data PortalNANOGP1 
Broad Tumor PortalNANOGP1
OASIS PortalNANOGP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNANOGP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNANOGP1
BioMutasearch NANOGP1
DgiDB (Drug Gene Interaction Database)NANOGP1
DoCM (Curated mutations)NANOGP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NANOGP1 (select a term)
intoGenNANOGP1
Cancer3DNANOGP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNANOGP1
Genetic Testing Registry NANOGP1
NextProtQ8N7R0 [Medical]
TSGene404635
GENETestsNANOGP1
Target ValidationNANOGP1
Huge Navigator NANOGP1 [HugePedia]
snp3D : Map Gene to Disease404635
BioCentury BCIQNANOGP1
ClinGenNANOGP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD404635
Chemical/Pharm GKB GenePA134899494
Clinical trialNANOGP1
Miscellaneous
canSAR (ICR)NANOGP1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNANOGP1
EVEXNANOGP1
GoPubMedNANOGP1
iHOPNANOGP1
b>Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:31:43 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.