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NANOGP8 (Nanog homeobox pseudogene 8)

Identity

Other aliasNANOG
NANOGP1
PN8
HGNC (Hugo) NANOGP8
LocusID (NCBI) 388112
Atlas_Id 52685
Location 15q14  [Link to chromosome band 15q14]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)NANOGP8   23106
Cards
Entrez_Gene (NCBI)NANOGP8  388112  Nanog homeobox pseudogene 8
AliasesNANOG; NANOGP1; PN8
GeneCards (Weizmann)NANOGP8
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  NANOGP8 [Vega]
TCGA cBioPortalNANOGP8
AceView (NCBI)NANOGP8
Genatlas (Paris)NANOGP8
WikiGenes388112
SOURCE (Princeton)NANOGP8
Genetics Home Reference (NIH)NANOGP8
Genomic and cartography
GoldenPath hg38 (UCSC)NANOGP8  -  
GoldenPath hg19 (UCSC)NANOGP8  -  
EnsemblNANOGP8 - [CytoView hg19]  NANOGP8 - [CytoView hg38]
Mapping of homologs : NCBINANOGP8 [Mapview hg19]  NANOGP8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NANOGP8
Gene ExpressionNANOGP8 [ NCBI-GEO ]   NANOGP8 [ EBI - ARRAY_EXPRESS ]   NANOGP8 [ SEEK ]   NANOGP8 [ MEM ]
Gene Expression Viewer (FireBrowse)NANOGP8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388112
GTEX Portal (Tissue expression)NANOGP8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NSW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NSW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NSW7
Splice isoforms : SwissVarQ6NSW7
PhosPhoSitePlusQ6NSW7
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)NANOGP8
DMDM Disease mutations388112
4a hraf../extdef.html#BLOCKS TARGET=BLOCKS>Blocks (Seattle)NANOGP8
PDB (SRS)4RBO   
PDB (PDBSum)4RBO   
PDB (IMB)4RBO   
PDB (RSDB)4RBO   
Structural Biology KnowledgeBase4RBO   
SCOP (Structural Classification of Proteins)4RBO   
CATH (Classification of proteins structures)4RBO   
SuperfamilyQ6NSW7
Peptide AtlasQ6NSW7
Protein Interaction databases
DIP (DOE-UCLA)Q6NSW7
IntAct (EBI)Q6NSW7
BioGRIDNANOGP8
STRING (EMBL)NANOGP8
ZODIACNANOGP8
Ontologies - Pathways
QuickGOQ6NSW7
Ontology : AmiGOnucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  
Ontology : EGO-EBInucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  
NDEx NetworkNANOGP8
Atlas of Cancer Signalling NetworkNANOGP8
Wikipedia pathwaysNANOGP8
Orthology - Evolution
OrthoDB388112
Phylogenetic Trees/Animal Genes : TreeFamNANOGP8
HOVERGENQ6NSW7
HOGENOMQ6NSW7
Homologs : HomoloGeneNANOGP8
Homology/Alignments : Family Browser (UCSC)NANOGP8
Gene fusions - Rearrangements
Fusion: Tumor Portal NANOGP8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNANOGP8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NANOGP8
dbVarNANOGP8
ClinVarNANOGP8
1000_GenomesNANOGP8 
Exome Variant ServerNANOGP8
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP388112
Genomic Variants (DGV)NANOGP8 [DGVbeta]
DECIPHERNANOGP8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNANOGP8 
Mutations
ICGC Data PortalNANOGP8 
TCGA Data PortalNANOGP8 
Broad Tumor PortalNANOGP8
OASIS PortalNANOGP8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNANOGP8
BioMutasearch NANOGP8
DgiDB (Drug Gene Interaction Database)NANOGP8
DoCM (Curated mutations)NANOGP8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NANOGP8 (select a term)
intoGenNANOGP8
Cancer3DNANOGP8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNANOGP8
Genetic Testing Registry NANOGP8
NextProtQ6NSW7 [Medical]
TSGene388112
GENETestsNANOGP8
Target ValidationNANOGP8
Huge Navigator NANOGP8 [HugePedia]
snp3D : Map Gene to Disease388112
BioCentury BCIQNANOGP8
ClinGenNANOGP8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388112
Chemical/Pharm GKB GenePA134937301
Clinical trialNANOGP8
Miscellaneous
canSAR (ICR)NANOGP8 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNANOGP8
EVEXNANOGP8
GoPubMedNANOGP8
iHOPNANOGP8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:01:56 CET 2017

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