Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NANOS3 (nanos homolog 3 (Drosophila))

Identity

Alias_namesnanos homolog 3 (Drosophila)
Alias_symbol (synonym)NANOS1L
NOS3
ZC2HC12C
Other alias
HGNC (Hugo) NANOS3
LocusID (NCBI) 342977
Atlas_Id 55514
Location 19p13.13  [Link to chromosome band 19p13]
Location_base_pair Starts at 13988063 and ends at 13991571 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NANOS3   22048
Cards
Entrez_Gene (NCBI)NANOS3  342977  nanos homolog 3 (Drosophila)
AliasesNANOS1L; NOS3
GeneCards (Weizmann)NANOS3
Ensembl hg19 (Hinxton)ENSG00000187556 [Gene_View]  chr19:13988063-13991571 [Contig_View]  NANOS3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000187556 [Gene_View]  chr19:13988063-13991571 [Contig_View]  NANOS3 [Vega]
ICGC DataPortalENSG00000187556
TCGA cBioPortalNANOS3
AceView (NCBI)NANOS3
Genatlas (Paris)NANOS3
WikiGenes342977
SOURCE (Princeton)NANOS3
Genetics Home Reference (NIH)NANOS3
Genomic and cartography
GoldenPath hg19 (UCSC)NANOS3  -     chr19:13988063-13991571 +  19p13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NANOS3  -     19p13.13   [Description]    (hg38-Dec_2013)
EnsemblNANOS3 - 19p13.13 [CytoView hg19]  NANOS3 - 19p13.13 [CytoView hg38]
Mapping of homologs : NCBINANOS3 [Mapview hg19]  NANOS3 [Mapview hg38]
OMIM608229   
Gene and transcription
Genbank (Entrez)BC101209 BC101210 BI793167 CK821051 CK821052
RefSeq transcript (Entrez)NM_001098622
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)NANOS3
Cluster EST : UnigeneHs.127982 [ NCBI ]
CGAP (NCI)Hs.127982
Alternative Splicing GalleryENSG00000187556
Gene ExpressionNANOS3 [ NCBI-GEO ]   NANOS3 [ EBI - ARRAY_EXPRESS ]   NANOS3 [ SEEK ]   NANOS3 [ MEM ]
Gene Expression Viewer (FireBrowse)NANOS3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342977
GTEX Portal (Tissue expression)NANOS3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60323   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60323  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60323
Splice isoforms : SwissVarP60323
PhosPhoSitePlusP60323
Domaine pattern : Prosite (Expaxy)ZF_NANOS (PS51522)   
Domains : Interpro (EBI)Nanos/Xcar2    Znf_nanos-typ   
Domain families : Pfam (Sanger)zf-nanos (PF05741)   
Domain families : Pfam (NCBI)pfam05741   
Conserved Domain (NCBI)NANOS3
DMDM Disease mutations342977
Blocks (Seattle)NANOS3
SuperfamilyP60323
Human Protein AtlasENSG00000187556
Peptide AtlasP60323
IPIIPI00746675   IPI00397636   
Protein Interaction databases
DIP (DOE-UCLA)P60323
IntAct (EBI)P60323
FunCoupENSG00000187556
BioGRIDNANOS3
STRING (EMBL)NANOS3
ZODIACNANOS3
Ontologies - Pathways
QuickGOP60323
Ontology : AmiGOcytoplasmic mRNA processing body  RNA binding  protein binding  nucleus  cytoplasm  regulation of translation  multicellular organism development  germ cell development  spermatogenesis  zinc ion binding  cytoplasmic stress granule  negative regulation of translation  perinuclear region of cytoplasm  oogenesis  regulation of cell cycle  positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay  negative regulation of apoptotic signaling pathway  
Ontology : EGO-EBIcytoplasmic mRNA processing body  RNA binding  protein binding  nucleus  cytoplasm  regulation of translation  multicellular organism development  germ cell development  spermatogenesis  zinc ion binding  cytoplasmic stress granule  negative regulation of translation  perinuclear region of cytoplasm  oogenesis  regulation of cell cycle  positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay  negative regulation of apoptotic signaling pathway  
NDEx NetworkNANOS3
Atlas of Cancer Signalling NetworkNANOS3
Wikipedia pathwaysNANOS3
Orthology - Evolution
OrthoDB342977
GeneTree (enSembl)ENSG00000187556
Phylogenetic Trees/Animal Genes : TreeFamNANOS3
HOVERGENP60323
HOGENOMP60323
Homologs : HomoloGeneNANOS3
Homology/Alignments : Family Browser (UCSC)NANOS3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNANOS3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NANOS3
dbVarNANOS3
ClinVarNANOS3
1000_GenomesNANOS3 
Exome Variant ServerNANOS3
ExAC (Exome Aggregation Consortium)NANOS3 (select the gene name)
Genetic variants : HAPMAP342977
Genomic Variants (DGV)NANOS3 [DGVbeta]
DECIPHER (Syndromes)19:13988063-13991571  ENSG00000187556
CONAN: Copy Number AnalysisNANOS3 
Mutations
ICGC Data PortalNANOS3 
TCGA Data PortalNANOS3 
Broad Tumor PortalNANOS3
OASIS PortalNANOS3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNANOS3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNANOS3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NANOS3
DgiDB (Drug Gene Interaction Database)NANOS3
DoCM (Curated mutations)NANOS3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NANOS3 (select a term)
intoGenNANOS3
Cancer3DNANOS3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608229   
Orphanet
MedgenNANOS3
Genetic Testing Registry NANOS3
NextProtP60323 [Medical]
TSGene342977
GENETestsNANOS3
Huge Navigator NANOS3 [HugePedia]
snp3D : Map Gene to Disease342977
BioCentury BCIQNANOS3
ClinGenNANOS3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342977
Chemical/Pharm GKB GenePA134867615
Clinical trialNANOS3
Miscellaneous
canSAR (ICR)NANOS3 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNANOS3
EVEXNANOS3
GoPubMedNANOS3
iHOPNANOS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:11:38 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.