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NANP (N-acetylneuraminic acid phosphatase)

Identity

Alias_namesC20orf147
HDHD4
chromosome 20 open reading frame 147
haloacid dehalogenase-like hydrolase domain containing 4
Alias_symbol (synonym)dJ694B14.3
MGC26833
Other alias
HGNC (Hugo) NANP
LocusID (NCBI) 140838
Atlas_Id 70685
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 25612936 and ends at 25624012 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NANP   16140
Cards
Entrez_Gene (NCBI)NANP  140838  N-acetylneuraminic acid phosphatase
AliasesC20orf147; HDHD4; dJ694B14.3
GeneCards (Weizmann)NANP
Ensembl hg19 (Hinxton)ENSG00000170191 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170191 [Gene_View]  chr20:25612936-25624012 [Contig_View]  NANP [Vega]
ICGC DataPortalENSG00000170191
TCGA cBioPortalNANP
AceView (NCBI)NANP
Genatlas (Paris)NANP
WikiGenes140838
SOURCE (Princeton)NANP
Genetics Home Reference (NIH)NANP
Genomic and cartography
GoldenPath hg38 (UCSC)NANP  -     chr20:25612936-25624012 -  20p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NANP  -     20p11.21   [Description]    (hg19-Feb_2009)
EnsemblNANP - 20p11.21 [CytoView hg19]  NANP - 20p11.21 [CytoView hg38]
Mapping of homologs : NCBINANP [Mapview hg19]  NANP [Mapview hg38]
OMIM610763   
Gene and transcription
Genbank (Entrez)AI693731 AK055472 AK074335 AL833116 BC003415
RefSeq transcript (Entrez)NM_152667
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NANP
Cluster EST : UnigeneHs.606268 [ NCBI ]
CGAP (NCI)Hs.606268
Alternative Splicing GalleryENSG00000170191
Gene ExpressionNANP [ NCBI-GEO ]   NANP [ EBI - ARRAY_EXPRESS ]   NANP [ SEEK ]   NANP [ MEM ]
Gene Expression Viewer (FireBrowse)NANP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140838
GTEX Portal (Tissue expression)NANP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBE9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBE9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBE9
Splice isoforms : SwissVarQ8TBE9
Catalytic activity : Enzyme3.1.3.29 [ Enzyme-Expasy ]   3.1.3.293.1.3.29 [ IntEnz-EBI ]   3.1.3.29 [ BRENDA ]   3.1.3.29 [ KEGG ]   
PhosPhoSitePlusQ8TBE9
Domains : Interpro (EBI)HAD-like_dom    HAD-SF_hydro_IA    HAD-SF_hydro_IA_CTE7   
Domain families : Pfam (Sanger)HAD_2 (PF13419)   
Domain families : Pfam (NCBI)pfam13419   
Conserved Domain (NCBI)NANP
DMDM Disease mutations140838
Blocks (Seattle)NANP
PDB (SRS)2W4M    4KNV    4KNW   
PDB (PDBSum)2W4M    4KNV    4KNW   
PDB (IMB)2W4M    4KNV    4KNW   
PDB (RSDB)2W4M    4KNV    4KNW   
Structural Biology KnowledgeBase2W4M    4KNV    4KNW   
SCOP (Structural Classification of Proteins)2W4M    4KNV    4KNW   
CATH (Classification of proteins structures)2W4M    4KNV    4KNW   
SuperfamilyQ8TBE9
Human Protein AtlasENSG00000170191
Peptide AtlasQ8TBE9
HPRD17097
IPIIPI00152196   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBE9
IntAct (EBI)Q8TBE9
FunCoupENSG00000170191
BioGRIDNANP
STRING (EMBL)NANP
ZODIACNANP
Ontologies - Pathways
QuickGOQ8TBE9
Ontology : AmiGOcellular_component  cytosol  carbohydrate metabolic process  N-acetylglucosamine biosynthetic process  dephosphorylation  N-acetylneuraminate biosynthetic process  N-acylneuraminate-9-phosphatase activity  N-acylneuraminate-9-phosphatase activity  
Ontology : EGO-EBIcellular_component  cytosol  carbohydrate metabolic process  N-acetylglucosamine biosynthetic process  dephosphorylation  N-acetylneuraminate biosynthetic process  N-acylneuraminate-9-phosphatase activity  N-acylneuraminate-9-phosphatase activity  
Pathways : KEGGAmino sugar and nucleotide sugar metabolism   
NDEx NetworkNANP
Atlas of Cancer Signalling NetworkNANP
Wikipedia pathwaysNANP
Orthology - Evolution
OrthoDB140838
GeneTree (enSembl)ENSG00000170191
Phylogenetic Trees/Animal Genes : TreeFamNANP
HOVERGENQ8TBE9
HOGENOMQ8TBE9
Homologs : HomoloGeneNANP
Homology/Alignments : Family Browser (UCSC)NANP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNANP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NANP
dbVarNANP
ClinVarNANP
1000_GenomesNANP 
Exome Variant ServerNANP
ExAC (Exome Aggregation Consortium)NANP (select the gene name)
Genetic variants : HAPMAP140838
Genomic Variants (DGV)NANP [DGVbeta]
DECIPHERNANP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNANP 
Mutations
ICGC Data PortalNANP 
TCGA Data PortalNANP 
Broad Tumor PortalNANP
OASIS PortalNANP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNANP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNANP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NANP
DgiDB (Drug Gene Interaction Database)NANP
DoCM (Curated mutations)NANP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NANP (select a term)
intoGenNANP
Cancer3DNANP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610763   
Orphanet
MedgenNANP
Genetic Testing Registry NANP
NextProtQ8TBE9 [Medical]
TSGene140838
GENETestsNANP
Target ValidationNANP
Huge Navigator NANP [HugePedia]
snp3D : Map Gene to Disease140838
BioCentury BCIQNANP
ClinGenNANP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140838
Chemical/Pharm GKB GenePA25689
Clinical trialNANP
Miscellaneous
canSAR (ICR)NANP (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNANP
EVEXNANP
GoPubMedNANP
iHOPNANP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:32:15 CEST 2017

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