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NAP1L2 (nucleosome assembly protein 1-like 2)

Identity

Alias_namesnucleosome assembly protein 1-like 2
Alias_symbol (synonym)BPX
MGC26243
Other alias
HGNC (Hugo) NAP1L2
LocusID (NCBI) 4674
Atlas_Id 70686
Location Xq13.2  [Link to chromosome band Xq13]
Location_base_pair Starts at 72432137 and ends at 72434710 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NAP1L2   7638
Cards
Entrez_Gene (NCBI)NAP1L2  4674  nucleosome assembly protein 1-like 2
AliasesBPX
GeneCards (Weizmann)NAP1L2
Ensembl hg19 (Hinxton)ENSG00000186462 [Gene_View]  chrX:72432137-72434710 [Contig_View]  NAP1L2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186462 [Gene_View]  chrX:72432137-72434710 [Contig_View]  NAP1L2 [Vega]
ICGC DataPortalENSG00000186462
TCGA cBioPortalNAP1L2
AceView (NCBI)NAP1L2
Genatlas (Paris)NAP1L2
WikiGenes4674
SOURCE (Princeton)NAP1L2
Genetics Home Reference (NIH)NAP1L2
Genomic and cartography
GoldenPath hg19 (UCSC)NAP1L2  -     chrX:72432137-72434710 -  Xq13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NAP1L2  -     Xq13.2   [Description]    (hg38-Dec_2013)
EnsemblNAP1L2 - Xq13.2 [CytoView hg19]  NAP1L2 - Xq13.2 [CytoView hg38]
Mapping of homologs : NCBINAP1L2 [Mapview hg19]  NAP1L2 [Mapview hg38]
OMIM300026   
Gene and transcription
Genbank (Entrez)AB027013 AF136178 AK291297 AK303676 AK316569
RefSeq transcript (Entrez)NM_021963
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_013274 NT_011651 NW_004929443
Consensus coding sequences : CCDS (NCBI)NAP1L2
Cluster EST : UnigeneHs.740565 [ NCBI ]
CGAP (NCI)Hs.740565
Alternative Splicing GalleryENSG00000186462
Gene ExpressionNAP1L2 [ NCBI-GEO ]   NAP1L2 [ EBI - ARRAY_EXPRESS ]   NAP1L2 [ SEEK ]   NAP1L2 [ MEM ]
Gene Expression Viewer (FireBrowse)NAP1L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4674
GTEX Portal (Tissue expression)NAP1L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULW6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULW6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULW6
Splice isoforms : SwissVarQ9ULW6
PhosPhoSitePlusQ9ULW6
Domains : Interpro (EBI)NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)NAP1L2
DMDM Disease mutations4674
Blocks (Seattle)NAP1L2
SuperfamilyQ9ULW6
Human Protein AtlasENSG00000186462
Peptide AtlasQ9ULW6
HPRD02066
IPIIPI00030392   IPI01009980   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULW6
IntAct (EBI)Q9ULW6
FunCoupENSG00000186462
BioGRIDNAP1L2
STRING (EMBL)NAP1L2
ZODIACNAP1L2
Ontologies - Pathways
QuickGOQ9ULW6
Ontology : AmiGOchromatin binding  protein binding  nucleus  nucleosome assembly  histone binding  positive regulation of neuron differentiation  positive regulation of histone H3-K14 acetylation  regulation of stem cell division  positive regulation of histone H3-K9 acetylation  
Ontology : EGO-EBIchromatin binding  protein binding  nucleus  nucleosome assembly  histone binding  positive regulation of neuron differentiation  positive regulation of histone H3-K14 acetylation  regulation of stem cell division  positive regulation of histone H3-K9 acetylation  
NDEx NetworkNAP1L2
Atlas of Cancer Signalling NetworkNAP1L2
Wikipedia pathwaysNAP1L2
Orthology - Evolution
OrthoDB4674
GeneTree (enSembl)ENSG00000186462
Phylogenetic Trees/Animal Genes : TreeFamNAP1L2
HOVERGENQ9ULW6
HOGENOMQ9ULW6
Homologs : HomoloGeneNAP1L2
Homology/Alignments : Family Browser (UCSC)NAP1L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNAP1L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NAP1L2
dbVarNAP1L2
ClinVarNAP1L2
1000_GenomesNAP1L2 
Exome Variant ServerNAP1L2
ExAC (Exome Aggregation Consortium)NAP1L2 (select the gene name)
Genetic variants : HAPMAP4674
Genomic Variants (DGV)NAP1L2 [DGVbeta]
DECIPHER (Syndromes)X:72432137-72434710  ENSG00000186462
CONAN: Copy Number AnalysisNAP1L2 
Mutations
ICGC Data PortalNAP1L2 
TCGA Data PortalNAP1L2 
Broad Tumor PortalNAP1L2
OASIS PortalNAP1L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNAP1L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNAP1L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch NAP1L2
DgiDB (Drug Gene Interaction Database)NAP1L2
DoCM (Curated mutations)NAP1L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NAP1L2 (select a term)
intoGenNAP1L2
Cancer3DNAP1L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300026   
Orphanet
MedgenNAP1L2
Genetic Testing Registry NAP1L2
NextProtQ9ULW6 [Medical]
TSGene4674
GENETestsNAP1L2
Huge Navigator NAP1L2 [HugePedia]
snp3D : Map Gene to Disease4674
BioCentury BCIQNAP1L2
ClinGenNAP1L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4674
Chemical/Pharm GKB GenePA31440
Clinical trialNAP1L2
Miscellaneous
canSAR (ICR)NAP1L2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNAP1L2
EVEXNAP1L2
GoPubMedNAP1L2
iHOPNAP1L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:34:30 CET 2017

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