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NAP1L3 (nucleosome assembly protein 1 like 3)

Identity

Alias_namesnucleosome assembly protein 1-like 3
Alias_symbol (synonym)MB20
NPL3
MGC26312
Other alias
HGNC (Hugo) NAP1L3
LocusID (NCBI) 4675
Atlas_Id 70687
Location Xq21.32  [Link to chromosome band Xq21]
Location_base_pair Starts at 93670926 and ends at 93673683 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MED13L (12q24.21) / NAP1L3 (Xq21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NAP1L3   7639
Cards
Entrez_Gene (NCBI)NAP1L3  4675  nucleosome assembly protein 1 like 3
AliasesMB20; NPL3
GeneCards (Weizmann)NAP1L3
Ensembl hg19 (Hinxton)ENSG00000186310 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186310 [Gene_View]  chrX:93670926-93673683 [Contig_View]  NAP1L3 [Vega]
ICGC DataPortalENSG00000186310
TCGA cBioPortalNAP1L3
AceView (NCBI)NAP1L3
Genatlas (Paris)NAP1L3
WikiGenes4675
SOURCE (Princeton)NAP1L3
Genetics Home Reference (NIH)NAP1L3
Genomic and cartography
GoldenPath hg38 (UCSC)NAP1L3  -     chrX:93670926-93673683 -  Xq21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NAP1L3  -     Xq21.32   [Description]    (hg19-Feb_2009)
EnsemblNAP1L3 - Xq21.32 [CytoView hg19]  NAP1L3 - Xq21.32 [CytoView hg38]
Mapping of homologs : NCBINAP1L3 [Mapview hg19]  NAP1L3 [Mapview hg38]
OMIM300117   
Gene and transcription
Genbank (Entrez)AA463251 AK090772 AK095682 AK223621 AK315176
RefSeq transcript (Entrez)NM_004538
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NAP1L3
Cluster EST : UnigeneHs.732006 [ NCBI ]
CGAP (NCI)Hs.732006
Alternative Splicing GalleryENSG00000186310
Gene ExpressionNAP1L3 [ NCBI-GEO ]   NAP1L3 [ EBI - ARRAY_EXPRESS ]   NAP1L3 [ SEEK ]   NAP1L3 [ MEM ]
Gene Expression Viewer (FireBrowse)NAP1L3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4675
GTEX Portal (Tissue expression)NAP1L3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99457   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99457  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99457
Splice isoforms : SwissVarQ99457
PhosPhoSitePlusQ99457
Domains : Interpro (EBI)NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)NAP1L3
DMDM Disease mutations4675
Blocks (Seattle)NAP1L3
SuperfamilyQ99457
Human Protein AtlasENSG00000186310
Peptide AtlasQ99457
HPRD02123
IPIIPI00293145   IPI01010702   
Protein Interaction databases
DIP (DOE-UCLA)Q99457
IntAct (EBI)Q99457
FunCoupENSG00000186310
BioGRIDNAP1L3
STRING (EMBL)NAP1L3
ZODIACNAP1L3
Ontologies - Pathways
QuickGOQ99457
Ontology : AmiGOnucleus  nucleosome assembly  
Ontology : EGO-EBInucleus  nucleosome assembly  
NDEx NetworkNAP1L3
Atlas of Cancer Signalling NetworkNAP1L3
Wikipedia pathwaysNAP1L3
Orthology - Evolution
OrthoDB4675
GeneTree (enSembl)ENSG00000186310
Phylogenetic Trees/Animal Genes : TreeFamNAP1L3
HOVERGENQ99457
HOGENOMQ99457
Homologs : HomoloGeneNAP1L3
Homology/Alignments : Family Browser (UCSC)NAP1L3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNAP1L3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NAP1L3
dbVarNAP1L3
ClinVarNAP1L3
1000_GenomesNAP1L3 
Exome Variant ServerNAP1L3
ExAC (Exome Aggregation Consortium)NAP1L3 (select the gene name)
Genetic variants : HAPMAP4675
Genomic Variants (DGV)NAP1L3 [DGVbeta]
DECIPHERNAP1L3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNAP1L3 
Mutations
ICGC Data PortalNAP1L3 
TCGA Data PortalNAP1L3 
Broad Tumor PortalNAP1L3
OASIS PortalNAP1L3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNAP1L3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNAP1L3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch NAP1L3
DgiDB (Drug Gene Interaction Database)NAP1L3
DoCM (Curated mutations)NAP1L3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NAP1L3 (select a term)
intoGenNAP1L3
Cancer3DNAP1L3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300117   
Orphanet
MedgenNAP1L3
Genetic Testing Registry NAP1L3
NextProtQ99457 [Medical]
TSGene4675
GENETestsNAP1L3
Target ValidationNAP1L3
Huge Navigator NAP1L3 [HugePedia]
snp3D : Map Gene to Disease4675
BioCentury BCIQNAP1L3
ClinGenNAP1L3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4675
Chemical/Pharm GKB GenePA31441
Clinical trialNAP1L3
Miscellaneous
canSAR (ICR)NAP1L3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNAP1L3
EVEXNAP1L3
GoPubMedNAP1L3
iHOPNAP1L3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:44 CEST 2017

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