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NAPB (NSF attachment protein beta)

Identity

Alias_namesN-ethylmaleimide-sensitive factor attachment protein
Alias_symbol (synonym)SNAP-BETA
SNAPB
Other alias
HGNC (Hugo) NAPB
LocusID (NCBI) 63908
Atlas_Id 56114
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 23374519 and ends at 23421519 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LOC100507412 (-) / NAPB (20p11.21)NAPB (20p11.21) / EDEM2 (20q11.22)NAPB (20p11.21) / ZFP91 (11q12.1)
NAPB (20p11.21) / ZNHIT3 (17q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NAPB   15751
Cards
Entrez_Gene (NCBI)NAPB  63908  NSF attachment protein beta
AliasesSNAP-BETA; SNAPB
GeneCards (Weizmann)NAPB
Ensembl hg19 (Hinxton)ENSG00000125814 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125814 [Gene_View]  chr20:23374519-23421519 [Contig_View]  NAPB [Vega]
ICGC DataPortalENSG00000125814
TCGA cBioPortalNAPB
AceView (NCBI)NAPB
Genatlas (Paris)NAPB
WikiGenes63908
SOURCE (Princeton)NAPB
Genetics Home Reference (NIH)NAPB
Genomic and cartography
GoldenPath hg38 (UCSC)NAPB  -     chr20:23374519-23421519 -  20p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NAPB  -     20p11.21   [Description]    (hg19-Feb_2009)
EnsemblNAPB - 20p11.21 [CytoView hg19]  NAPB - 20p11.21 [CytoView hg38]
Mapping of homologs : NCBINAPB [Mapview hg19]  NAPB [Mapview hg38]
OMIM611270   
Gene and transcription
Genbank (Entrez)AI285959 AK022817 AK124876 AK125811 AK126340
RefSeq transcript (Entrez)NM_001283018 NM_001283020 NM_001283026 NM_022080
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NAPB
Cluster EST : UnigeneHs.269471 [ NCBI ]
CGAP (NCI)Hs.269471
Alternative Splicing GalleryENSG00000125814
Gene ExpressionNAPB [ NCBI-GEO ]   NAPB [ EBI - ARRAY_EXPRESS ]   NAPB [ SEEK ]   NAPB [ MEM ]
Gene Expression Viewer (FireBrowse)NAPB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63908
GTEX Portal (Tissue expression)NAPB
Human Protein AtlasENSG00000125814-NAPB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H115   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H115  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H115
Splice isoforms : SwissVarQ9H115
PhosPhoSitePlusQ9H115
Domains : Interpro (EBI)NSF_attach    TPR-like_helical_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NAPB
DMDM Disease mutations63908
Blocks (Seattle)NAPB
SuperfamilyQ9H115
Human Protein Atlas [tissue]ENSG00000125814-NAPB [tissue]
Peptide AtlasQ9H115
HPRD17627
IPIIPI00748037   IPI00942239   IPI00908301   IPI00748905   
Protein Interaction databases
DIP (DOE-UCLA)Q9H115
IntAct (EBI)Q9H115
FunCoupENSG00000125814
BioGRIDNAPB
STRING (EMBL)NAPB
ZODIACNAPB
Ontologies - Pathways
QuickGOQ9H115
Ontology : AmiGOsoluble NSF attachment protein activity  protein binding  vacuolar membrane  intracellular protein transport  syntaxin binding  SNARE complex  SNARE complex disassembly  membrane fusion  extracellular exosome  
Ontology : EGO-EBIsoluble NSF attachment protein activity  protein binding  vacuolar membrane  intracellular protein transport  syntaxin binding  SNARE complex  SNARE complex disassembly  membrane fusion  extracellular exosome  
NDEx NetworkNAPB
Atlas of Cancer Signalling NetworkNAPB
Wikipedia pathwaysNAPB
Orthology - Evolution
OrthoDB63908
GeneTree (enSembl)ENSG00000125814
Phylogenetic Trees/Animal Genes : TreeFamNAPB
HOVERGENQ9H115
HOGENOMQ9H115
Homologs : HomoloGeneNAPB
Homology/Alignments : Family Browser (UCSC)NAPB
Gene fusions - Rearrangements
Fusion: Tumor Portal NAPB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNAPB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NAPB
dbVarNAPB
ClinVarNAPB
1000_GenomesNAPB 
Exome Variant ServerNAPB
ExAC (Exome Aggregation Consortium)ENSG00000125814
GNOMAD BrowserENSG00000125814
Genetic variants : HAPMAP63908
Genomic Variants (DGV)NAPB [DGVbeta]
DECIPHERNAPB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNAPB 
Mutations
ICGC Data PortalNAPB 
TCGA Data PortalNAPB 
Broad Tumor PortalNAPB
OASIS PortalNAPB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNAPB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNAPB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NAPB
DgiDB (Drug Gene Interaction Database)NAPB
DoCM (Curated mutations)NAPB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NAPB (select a term)
intoGenNAPB
Cancer3DNAPB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611270   
Orphanet
MedgenNAPB
Genetic Testing Registry NAPB
NextProtQ9H115 [Medical]
TSGene63908
GENETestsNAPB
Target ValidationNAPB
Huge Navigator NAPB [HugePedia]
snp3D : Map Gene to Disease63908
BioCentury BCIQNAPB
ClinGenNAPB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63908
Chemical/Pharm GKB GenePA31444
Clinical trialNAPB
Miscellaneous
canSAR (ICR)NAPB (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNAPB
EVEXNAPB
GoPubMedNAPB
iHOPNAPB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 13:01:58 CET 2017

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