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NAPRT (nicotinate phosphoribosyltransferase)

Identity

Alias_namesNAPRT1
nicotinate phosphoribosyltransferase domain containing 1
Alias_symbol (synonym)PP3856
Other alias
HGNC (Hugo) NAPRT
LocusID (NCBI) 93100
Atlas_Id 54027
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 143574785 and ends at 143578351 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LCN2 (9q34.11) / NAPRT (8q24.3)NAPRT (8q24.3) / NAPRT (8q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NAPRT   30450
Cards
Entrez_Gene (NCBI)NAPRT  93100  nicotinate phosphoribosyltransferase
AliasesNAPRT1; PP3856
GeneCards (Weizmann)NAPRT
Ensembl hg19 (Hinxton)ENSG00000147813 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147813 [Gene_View]  chr8:143574785-143578351 [Contig_View]  NAPRT [Vega]
ICGC DataPortalENSG00000147813
TCGA cBioPortalNAPRT
AceView (NCBI)NAPRT
Genatlas (Paris)NAPRT
WikiGenes93100
SOURCE (Princeton)NAPRT
Genetics Home Reference (NIH)NAPRT
Genomic and cartography
GoldenPath hg38 (UCSC)NAPRT  -     chr8:143574785-143578351 -  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NAPRT  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblNAPRT - 8q24.3 [CytoView hg19]  NAPRT - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBINAPRT [Mapview hg19]  NAPRT [Mapview hg38]
OMIM611552   
Gene and transcription
Genbank (Entrez)AB242230 AF258565 AK097002 AY214325 AY214326
RefSeq transcript (Entrez)NM_001286829 NM_145201
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_187571
Consensus coding sequences : CCDS (NCBI)NAPRT
Cluster EST : UnigeneHs.493164 [ NCBI ]
CGAP (NCI)Hs.493164
Alternative Splicing GalleryENSG00000147813
Gene ExpressionNAPRT [ NCBI-GEO ]   NAPRT [ EBI - ARRAY_EXPRESS ]   NAPRT [ SEEK ]   NAPRT [ MEM ]
Gene Expression Viewer (FireBrowse)NAPRT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93100
GTEX Portal (Tissue expression)NAPRT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6XQN6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6XQN6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6XQN6
Splice isoforms : SwissVarQ6XQN6
Catalytic activity : Enzyme6.3.4.21 [ Enzyme-Expasy ]   6.3.4.216.3.4.21 [ IntEnz-EBI ]   6.3.4.21 [ BRENDA ]   6.3.4.21 [ KEGG ]   
PhosPhoSitePlusQ6XQN6
Domains : Interpro (EBI)Nic_PRibTrfase-Fam    Nic_PRibTrfase_pncB    Quinolinate_PRibosylTrfase_C   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NAPRT
DMDM Disease mutations93100
Blocks (Seattle)NAPRT
PDB (SRS)4YUB   
PDB (PDBSum)4YUB   
PDB (IMB)4YUB   
PDB (RSDB)4YUB   
Structural Biology KnowledgeBase4YUB   
SCOP (Structural Classification of Proteins)4YUB   
CATH (Classification of proteins structures)4YUB   
SuperfamilyQ6XQN6
Human Protein AtlasENSG00000147813
Peptide AtlasQ6XQN6
HPRD15161
IPIIPI00465085   IPI00879716   IPI00880164   IPI00952992   IPI00412498   IPI00978154   IPI00978857   
Protein Interaction databases
DIP (DOE-UCLA)Q6XQN6
IntAct (EBI)Q6XQN6
FunCoupENSG00000147813
BioGRIDNAPRT
STRING (EMBL)NAPRT
ZODIACNAPRT
Ontologies - Pathways
QuickGOQ6XQN6
Ontology : AmiGOnicotinate-nucleotide diphosphorylase (carboxylating) activity  nicotinate phosphoribosyltransferase activity  nicotinate phosphoribosyltransferase activity  protein binding  extracellular region  cytosol  cytosol  response to oxidative stress  ligase activity  nicotinate nucleotide salvage  NAD biosynthesis via nicotinamide riboside salvage pathway  azurophil granule lumen  neutrophil degranulation  extracellular exosome  
Ontology : EGO-EBInicotinate-nucleotide diphosphorylase (carboxylating) activity  nicotinate phosphoribosyltransferase activity  nicotinate phosphoribosyltransferase activity  protein binding  extracellular region  cytosol  cytosol  response to oxidative stress  ligase activity  nicotinate nucleotide salvage  NAD biosynthesis via nicotinamide riboside salvage pathway  azurophil granule lumen  neutrophil degranulation  extracellular exosome  
NDEx NetworkNAPRT
Atlas of Cancer Signalling NetworkNAPRT
Wikipedia pathwaysNAPRT
Orthology - Evolution
OrthoDB93100
GeneTree (enSembl)ENSG00000147813
Phylogenetic Trees/Animal Genes : TreeFamNAPRT
HOVERGENQ6XQN6
HOGENOMQ6XQN6
Homologs : HomoloGeneNAPRT
Homology/Alignments : Family Browser (UCSC)NAPRT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNAPRT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NAPRT
dbVarNAPRT
ClinVarNAPRT
1000_GenomesNAPRT 
Exome Variant ServerNAPRT
ExAC (Exome Aggregation Consortium)NAPRT (select the gene name)
Genetic variants : HAPMAP93100
Genomic Variants (DGV)NAPRT [DGVbeta]
DECIPHERNAPRT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNAPRT 
Mutations
ICGC Data PortalNAPRT 
TCGA Data PortalNAPRT 
Broad Tumor PortalNAPRT
OASIS PortalNAPRT [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNAPRT
BioMutasearch NAPRT
DgiDB (Drug Gene Interaction Database)NAPRT
DoCM (Curated mutations)NAPRT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NAPRT (select a term)
intoGenNAPRT
Cancer3DNAPRT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611552   
Orphanet
MedgenNAPRT
Genetic Testing Registry NAPRT
NextProtQ6XQN6 [Medical]
TSGene93100
GENETestsNAPRT
Target ValidationNAPRT
Huge Navigator NAPRT [HugePedia]
snp3D : Map Gene to Disease93100
BioCentury BCIQNAPRT
ClinGenNAPRT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93100
Chemical/Pharm GKB GenePA142671293
Clinical trialNAPRT
Miscellaneous
canSAR (ICR)NAPRT (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNAPRT
EVEXNAPRT
GoPubMedNAPRT
iHOPNAPRT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:46:06 CEST 2017

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