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NARF (nuclear prelamin A recognition factor)

Identity

Alias (NCBI)IOP2
HGNC (Hugo) NARF
HGNC Alias symbFLJ10067
DKFZp434G0420
IOP2
HGNC Alias nameiron-only hydrogenase-like protein 2
LocusID (NCBI) 26502
Atlas_Id 70693
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 82458664 and ends at 82488267 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FOXK2 (17q25.3) / NARF (17q25.3)ITGB4 (17q25.1) / NARF (17q25.3)SEPT9 (17q25.2) / NARF (17q25.3)
ITGB4 NARFSEPT9 NARFFOXK2 NARF

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  FOXK2/NARF (17q25)
ITGB4/NARF (17q25)
SEPT9/NARF (17q25)

External links

Nomenclature
HGNC (Hugo)NARF   29916
Cards
Entrez_Gene (NCBI)NARF    nuclear prelamin A recognition factor
AliasesIOP2
GeneCards (Weizmann)NARF
Ensembl hg19 (Hinxton)ENSG00000141562 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141562 [Gene_View]  ENSG00000141562 [Sequence]  chr17:82458664-82488267 [Contig_View]  NARF [Vega]
ICGC DataPortalENSG00000141562
TCGA cBioPortalNARF
AceView (NCBI)NARF
Genatlas (Paris)NARF
SOURCE (Princeton)NARF
Genetics Home Reference (NIH)NARF
Genomic and cartography
GoldenPath hg38 (UCSC)NARF  -     chr17:82458664-82488267 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NARF  -     17q25.3   [Description]    (hg19-Feb_2009)
GoldenPathNARF - 17q25.3 [CytoView hg19]  NARF - 17q25.3 [CytoView hg38]
ImmunoBaseENSG00000141562
genome Data Viewer NCBINARF [Mapview hg19]  
OMIM605349   
Gene and transcription
Genbank (Entrez)AA568571 AF128406 AK000929 AK056966 AK093717
RefSeq transcript (Entrez)NM_001038618 NM_001083608 NM_012336 NM_031968
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NARF
Alternative Splicing GalleryENSG00000141562
Gene ExpressionNARF [ NCBI-GEO ]   NARF [ EBI - ARRAY_EXPRESS ]   NARF [ SEEK ]   NARF [ MEM ]
Gene Expression Viewer (FireBrowse)NARF [ Firebrowse - Broad ]
GenevisibleExpression of NARF in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26502
GTEX Portal (Tissue expression)NARF
Human Protein AtlasENSG00000141562-NARF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHQ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHQ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHQ1
Splice isoforms : SwissVarQ9UHQ1
PhosPhoSitePlusQ9UHQ1
Domains : Interpro (EBI)Fe_hydrogenase    Fe_hydrogenase_lsu_C    Fe_hydrogenase_ssu   
Domain families : Pfam (Sanger)Fe_hyd_lg_C (PF02906)    Fe_hyd_SSU (PF02256)   
Domain families : Pfam (NCBI)pfam02906    pfam02256   
Domain families : Smart (EMBL)Fe_hyd_SSU (SM00902)  
Conserved Domain (NCBI)NARF
Blocks (Seattle)NARF
SuperfamilyQ9UHQ1
Human Protein Atlas [tissue]ENSG00000141562-NARF [tissue]
Peptide AtlasQ9UHQ1
HPRD05637
IPIIPI00185459   IPI00744719   IPI00902741   IPI00908760   IPI00908851   IPI00011237   IPI00185056   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHQ1
IntAct (EBI)Q9UHQ1
BioGRIDNARF
STRING (EMBL)NARF
ZODIACNARF
Ontologies - Pathways
QuickGOQ9UHQ1
Ontology : AmiGOlamin binding  lamin binding  lamin filament  lamin filament  nuclear lamina  nucleoplasm  nucleolus  nuclear lumen  
Ontology : EGO-EBIlamin binding  lamin binding  lamin filament  lamin filament  nuclear lamina  nucleoplasm  nucleolus  nuclear lumen  
NDEx NetworkNARF
Atlas of Cancer Signalling NetworkNARF
Wikipedia pathwaysNARF
Orthology - Evolution
OrthoDB26502
GeneTree (enSembl)ENSG00000141562
Phylogenetic Trees/Animal Genes : TreeFamNARF
HOGENOMQ9UHQ1
Homologs : HomoloGeneNARF
Homology/Alignments : Family Browser (UCSC)NARF
Gene fusions - Rearrangements
Fusion PortalITGB4 NARF
Fusion PortalSEPT9 NARF
Fusion PortalFOXK2 NARF
Fusion : QuiverNARF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNARF [hg38]
dbVarNARF
ClinVarNARF
MonarchNARF
1000_GenomesNARF 
Exome Variant ServerNARF
GNOMAD BrowserENSG00000141562
Varsome BrowserNARF
Genomic Variants (DGV)NARF [DGVbeta]
DECIPHERNARF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNARF 
Mutations
ICGC Data PortalNARF 
TCGA Data PortalNARF 
Broad Tumor PortalNARF
OASIS PortalNARF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNARF  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNARF
Mutations and Diseases : HGMDNARF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NARF
DgiDB (Drug Gene Interaction Database)NARF
DoCM (Curated mutations)NARF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NARF (select a term)
intoGenNARF
Cancer3DNARF(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605349   
Orphanet
DisGeNETNARF
MedgenNARF
Genetic Testing Registry NARF
NextProtQ9UHQ1 [Medical]
GENETestsNARF
Target ValidationNARF
Huge Navigator NARF [HugePedia]
ClinGenNARF
Clinical trials, drugs, therapy
MyCancerGenomeNARF
Protein Interactions : CTD
Pharm GKB GenePA142671294
Clinical trialNARF
Miscellaneous
canSAR (ICR)NARF (select the gene name)
HarmonizomeNARF
DataMed IndexNARF
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNARF
EVEXNARF
GoPubMedNARF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:18:43 CET 2020
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